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Gencode Genes

CTSD (ENST00000236671.7) at chr11:1752755-1763927 - Homo sapiens cathepsin D (CTSD), mRNA. (from RefSeq NM_001909)
CTSD (ENST00000637937.1) at chr11:1752788-1755247 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000637915.1) at chr11:1752788-1763896 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000637815.1) at chr11:1752768-1763906 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000637387.1) at chr11:1753206-1763941 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000637381.1) at chr11:1759052-1764573 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000637158.1) at chr11:1753140-1758033 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000636843.1) at chr11:1753313-1763948 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000636571.1) at chr11:1752999-1763927 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000497544.2) at chr11:1753799-1755348 - cathepsin D (from HGNC CTSD)
CTSD (ENST00000438213.5) at chr11:1754024-1761540 - Belongs to the peptidase A1 family. (from UniProt C9JH19)
CTSD (ENST00000433655.5) at chr11:1752775-1763901 - Belongs to the peptidase A1 family. (from UniProt F8WD96)
CTSD (ENST00000429746.1) at chr11:1753383-1754946 - Belongs to the peptidase A1 family. (from UniProt H7C1V0)
CTSD (ENST00000367196.3) at chr11:1757324-1762403 - Belongs to the peptidase A1 family. (from UniProt F8W787)
PLEKHF1 (ENST00000592810.1) at chr19:29665459-29674843 - May induce apoptosis through the lysosomal-mitochondrial  pathway. Translocates to the lysosome initiating the  permeabilization of lysosomal membrane (LMP) and resulting in the  release of CTSD and CTSL to the cytoplasm. Triggers the caspase-  independent apoptosis by altering mitochondrial membrane  permeabilization (MMP) resulting in the release of PDCD8. (from UniProt Q96S99)
VPS54 (ENST00000354504.7) at chr2:63892901-63975602 - May be involved in retrograde transport from early and  late endosomes to the late Golgi. The GARP complex is required for  the maintenance of the cycling of mannose 6-phosphate receptors  between the TGN and endosomes, this cycling is necessary for  proper lysosomal sorting of acid hydrolases such as CTSD. (from UniProt Q9P1Q0)
PAQR8 (ENST00000360726.3) at chr6:52362446-52407691 - Steroid membrane receptor. Binds progesterone. May be  involved in oocyte maturation (By similarity). (from UniProt Q8TEZ7)
PLEKHF1 (ENST00000436066.4) at chr19:29665461-29675477 - Homo sapiens pleckstrin homology and FYVE domain containing 1 (PLEKHF1), mRNA. (from RefSeq NM_024310)
PAQR8 (ENST00000442253.3) at chr6:52362151-52407777 - Homo sapiens progestin and adipoQ receptor family member 8 (PAQR8), mRNA. (from RefSeq NM_133367)
VPS53 (ENST00000638350.1) at chr17_KV766196v1_fix:91795-274320 - Homo sapiens VPS53 subunit of GARP complex (VPS53), transcript variant 2, mRNA. (from RefSeq NM_018289)
VPS53 (ENST00000639801.2) at chr17_KV766196v1_fix:68145-274316 - Homo sapiens VPS53 subunit of GARP complex (VPS53), transcript variant 1, mRNA. (from RefSeq NM_001128159)
VPS53 (ENST00000291074.9) at chr17:532318-714843 - Homo sapiens VPS53 subunit of GARP complex (VPS53), transcript variant 2, mRNA. (from RefSeq NM_018289)
VPS53 (ENST00000437048.7) at chr17:508668-714839 - Homo sapiens VPS53 subunit of GARP complex (VPS53), transcript variant 1, mRNA. (from RefSeq NM_001128159)
RBSN (ENST00000253699.7) at chr3:15070073-15099148 - Homo sapiens rabenosyn, RAB effector (RBSN), transcript variant 1, mRNA. (from RefSeq NM_022340)
RBSN (ENST00000476527.6) at chr3:15073605-15099163 - Homo sapiens rabenosyn, RAB effector (RBSN), transcript variant 2, mRNA. (from RefSeq NM_001302378)
VPS54 (ENST00000409558.8) at chr2:63892146-64019072 - Homo sapiens VPS54 subunit of GARP complex (VPS54), transcript variant 2, mRNA. (from RefSeq NM_001005739)
VPS54 (ENST00000272322.9) at chr2:63892150-64019428 - Homo sapiens VPS54 subunit of GARP complex (VPS54), transcript variant 1, mRNA. (from RefSeq NM_016516)
VPS52 (ENST00000445902.3) at chr6:33250278-33271876 - Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript variant 1, mRNA. (from RefSeq NM_022553)
VPS52 (ENST00000448042.2) at chr6_GL000251v2_alt:4661769-4683375 - Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript variant 1, mRNA. (from RefSeq NM_022553)
VPS52 (ENST00000441058.2) at chr6_GL000252v2_alt:4493784-4515408 - Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript variant 1, mRNA. (from RefSeq NM_022553)
VPS52 (ENST00000443860.2) at chr6_GL000254v2_alt:4686254-4707856 - Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript variant 1, mRNA. (from RefSeq NM_022553)
VPS52 (ENST00000383210.4) at chr6_GL000255v2_alt:4444672-4466311 - Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript variant 1, mRNA. (from RefSeq NM_022553)
VPS52 (ENST00000428608.2) at chr6_GL000256v2_alt:4698976-4720575 - Homo sapiens VPS52 subunit of GARP complex (VPS52), transcript variant 1, mRNA. (from RefSeq NM_022553)
VPS53 (ENST00000639896.1) at chr17_KV766196v1_fix:92185-274323 - Homo sapiens VPS53 subunit of GARP complex (VPS53), transcript variant 3, mRNA. (from RefSeq NM_001366253)
VPS53 (ENST00000571805.5) at chr17:532708-714846 - Homo sapiens VPS53 subunit of GARP complex (VPS53), transcript variant 3, mRNA. (from RefSeq NM_001366253)
TGM3 (ENST00000381458.6) at chr20:2296001-2341079 - Homo sapiens transglutaminase 3 (TGM3), mRNA. (from RefSeq NM_003245)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001909.4 at chr11:1752752-1763992

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

CTSD at chr11:1752755-1763927

RefSeq Genes

CTSD at chr11:1752755-1763927 - (NM_001909) cathepsin D preproprotein

Non-Human RefSeq Genes

ctsd at chr11:1753515-1759639 - (NM_001078584) cathepsin D precursor
ctsd at chr11:1753521-1759639 - (NM_001292945) cathepsin D
CTSD at chr11:1753114-1763927 - (NM_001283556) cathepsin D precursor
ctsd at chr11:1753521-1759639 - (NM_001294231) cathepsin D precursor
ctsd at chr11:1753515-1761470 - (NM_203633) cathepsin D precursor
CTSD at chr11:1753407-1763866 - (NM_001260554) cathepsin D precursor
CTSD at chr11:1753503-1763848 - (NM_001168903) cathepsin D precursor
ctsd at chr11:1753515-1759639 - (NM_001257110) cathepsin D precursor
CTSD at chr11:1752765-1763876 - (NM_001132020) cathepsin D precursor
Ctsd at chr11:1753503-1761470 - (NM_134334) cathepsin D precursor
ctsd at chr11:1753515-1759639 - (NM_131710) cathepsin D precursor
CTSD at chr11:1753325-1763925 - (NM_001025621) cathepsin D precursor
CTSD at chr11:1753294-1763940 - (NM_001037721) cathepsin D precursor
CTSD at chr11:1753521-1759639 - (NM_205177) cathepsin D precursor
Ctsd at chr11:1753336-1761470 - (NM_009983) cathepsin D precursor
CTSD at chr11:1753502-1763945 - (NM_001166521) cathepsin D precursor
ctsd.S at chr11:1753515-1761470 - (NM_001091839) cathepsin D precursor
ctsd2 at chr11:1753515-1759636 - (NM_001078585) cathepsin D2 precursor

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CTSD at chr11:1752755-1763927
CTSD at chr11:1752768-1763906
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CTSD at chr11:1752755-1763927
CTSD at chr11:1752768-1763906
CTSD at chr11:1752775-1763901
CTSD at chr11:1752788-1755247
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753140-1758033
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948
CTSD at chr11:1753383-1754946
CTSD at chr11:1753799-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403
CTSD at chr11:1759052-1764573

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752775-1763901
CTSD at chr11:1752788-1755247
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753140-1758033
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948
CTSD at chr11:1753383-1754946
CTSD at chr11:1753799-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403
CTSD at chr11:1759052-1764573

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752775-1763901
CTSD at chr11:1752788-1755247
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753140-1758033
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948
CTSD at chr11:1753383-1754946
CTSD at chr11:1753799-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403
CTSD at chr11:1759052-1764573

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752775-1763901
CTSD at chr11:1752788-1755247
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753140-1758033
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948
CTSD at chr11:1753383-1754946
CTSD at chr11:1753799-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403
CTSD at chr11:1759052-1764573

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752775-1763901
CTSD at chr11:1752788-1755247
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753140-1758033
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948
CTSD at chr11:1753383-1754946
CTSD at chr11:1753799-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403
CTSD at chr11:1759052-1764573

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752768-1763906
CTSD at chr11:1752775-1763901
CTSD at chr11:1752788-1755247
CTSD at chr11:1752788-1763896
CTSD at chr11:1752999-1763927
CTSD at chr11:1753140-1758033
CTSD at chr11:1753206-1763941
CTSD at chr11:1753313-1763948
CTSD at chr11:1753383-1754946
CTSD at chr11:1753799-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403
CTSD at chr11:1759052-1764573

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CTSD at chr11:1752752-1763992

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752775-1763901
CTSD at chr11:1753383-1754946
CTSD at chr11:1753805-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CTSD at chr11:1752752-1763992

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752775-1763901
CTSD at chr11:1753383-1754946
CTSD at chr11:1753805-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CTSD at chr11:1752752-1763992

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752775-1763901
CTSD at chr11:1753383-1754946
CTSD at chr11:1753805-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CTSD at chr11:1752752-1763992

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CTSD at chr11:1752752-1763992
CTSD at chr11:1752775-1763901
CTSD at chr11:1753383-1754946
CTSD at chr11:1753805-1755348
CTSD at chr11:1754024-1761540
CTSD at chr11:1757324-1762403

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ctsd_38075 at chr11:1752755-1763992
Ctsd_38076 at chr11:1752755-1763992
Ctsd_38077 at chr11:1752755-1763992
Ctsd_VG17241 at chr11:1752755-1763992

Alias of STS Marker

CTSD at chr11:1657323-1857556 - (RH27296)

Human Aligned mRNA Search Results

KU178007 - Homo sapiens cathepsin D isoform 1 (CTSD) mRNA, partial cds.
KU178008 - Homo sapiens cathepsin D isoform 2 (CTSD) mRNA, partial cds, alternatively spliced.
BC016320 - Homo sapiens cathepsin D, mRNA (cDNA clone MGC:2311 IMAGE:3506977), complete cds.
CR456947 - Homo sapiens full open reading frame cDNA clone RZPDo834E1218D for gene CTSD, cathepsin D (lysosomal aspartyl protease); complete cds, incl. stopcodon.
M11233 - Human cathepsin D mRNA, complete cds.

Non-Human Aligned mRNA Search Results

BC042316 - Danio rerio cathepsin D, mRNA (cDNA clone MGC:55226 IMAGE:2641996), complete cds.
BC062824 - Danio rerio cathepsin D, mRNA (cDNA clone MGC:77573 IMAGE:7000629), complete cds.
BC154315 - Danio rerio cathepsin D, mRNA (cDNA clone MGC:174473 IMAGE:8351175), complete cds.
BC164814 - Danio rerio cathepsin D, mRNA (cDNA clone MGC:191989 IMAGE:100060298), complete cds.
BC019682 - Mus musculus cathepsin D, mRNA (cDNA clone IMAGE:4500905), partial cds.
BC048900 - Mus musculus cathepsin D, mRNA (cDNA clone IMAGE:3154895), complete cds.
KJ524456 - Sparus aurata cathepsin Db (CTSDb) mRNA, complete cds.
AB179549 - Takifugu rubripes CTSD2 mRNA for cathepsin D2, complete cds.
AB179548 - Takifugu rubripes CTSD1 mRNA for cathepsin D1, complete cds.
BC054758 - Mus musculus cathepsin D, mRNA (cDNA clone MGC:64768 IMAGE:6413315), complete cds.
BC057931 - Mus musculus cathepsin D, mRNA (cDNA clone MGC:65196 IMAGE:5253319), complete cds.
BC062032 - Rattus norvegicus cathepsin D, mRNA (cDNA clone MGC:72315 IMAGE:5623627), complete cds.
MK244977 - Procambarus clarkii strain PC02122016 cathepsin D (Ctsd) mRNA, partial cds.
Y16962 - Dictyostelium discoideum mRNA for cathepsin D.
HF947829 - Channa striatus mRNA for cathepsin D (ctsD gene).
KC465261 - Placozoa sp. H4 aspartyl protease (CtsD) mRNA, complete cds.
FN316610 - Schistosoma japonicum isolate Anhui full length mRNA clone SJFCA3901.040|FSA001-P00034-D20, complete sequence.
FN330832 - Schistosoma japonicum isolate Anhui partial mRNA clone SJFCA3901.044|FSA001-P00022-J04.
HG710162 - Tityus serrulatus mRNA for cathepsin D-like aspartic peptidase 1 (ctsd gene).
AM048627 - Canis familiaris mRNA for cathepsin D (ctsd gene).
MG133507 - Synthetic construct Xenopus tropicalis clone IMAGE:5385037 cathepsin D (ctsd) gene, encodes complete protein.
MG134067 - Synthetic construct Xenopus tropicalis clone IMAGE:6998718 cathepsin D (ctsd) gene, encodes complete protein.
DQ912663 - Hippoglossus hippoglossus cathepsin D (ctsd) mRNA, complete cds.
KC237276 - Solea senegalensis cathepsin D (ctsd) mRNA, partial cds.
BC061433 - Xenopus tropicalis cathepsin D (lysosomal aspartyl protease), mRNA (cDNA clone MGC:76043 IMAGE:5385037), complete cds.
BT043515 - Salmo salar clone HM4_0887 cathepsin D (ctsd) mRNA, complete cds.
MG599829 - Tachysurus fulvidraco cathepsin D (ctsd) mRNA, partial cds.
AF164143 - Ovis aries cathepsin D (CTSD) mRNA, partial cds.
KJ004415 - Capra hircus cathepsin D (CTSD) mRNA, partial cds.
AY888315 - Synthetic construct Homo sapiens clone FLH008539.01X cathepsin D (CTSD) mRNA, complete cds.
AY890251 - Synthetic construct Homo sapiens clone FLH024315.01X cathepsin D (CTSD) mRNA, complete cds.
AY890417 - Synthetic construct Homo sapiens clone FLH031241.01X cathepsin D (CTSD) mRNA, complete cds.
AY892734 - Synthetic construct Homo sapiens clone FLH024310.01L cathepsin D (CTSD) mRNA, partial cds.
AY892880 - Synthetic construct Homo sapiens clone FLH031237.01L cathepsin D (CTSD) mRNA, partial cds.
AY893487 - Synthetic construct Homo sapiens clone FLH127809.01X cathepsin D (CTSD) mRNA, complete cds.
JV043195 - TSA: Macaca mulatta Mamu_403079 mRNA sequence.
AB854063 - Anguilla japonica CTSD mRNA for cathepsin D, partial cds.
MH301098 - Tachysurus fulvidraco Cathepsin D1 (CTSD) mRNA, complete cds.
MH580286 - Acipenser sinensis cathepsin D (CTSD) mRNA, complete cds.
AB170757 - Macaca fascicularis brain cDNA clone: QmoA-12472, similar to human cathepsin D (lysosomal aspartyl protease) (CTSD), mRNA, RefSeq: NM_001909.3.
AB169854 - Macaca fascicularis brain cDNA, clone: QccE-11243, similar to human cathepsin D (lysosomal aspartyl protease) (CTSD), mRNA, RefSeq: NM_001909.3.

GeneReviews

CTSD at chr11:1752755-1763927