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UCSC Genes

CNTN6 (uc003bpa.3) at chr3:1134629-1445278 - Homo sapiens contactin 6 (CNTN6), mRNA.
CNTN6 (uc011asj.2) at chr3:1134620-1445278 - Homo sapiens contactin 6 (CNTN6), mRNA.
CNTN6 (uc010hbo.2) at chr3:1134620-1340053 - Homo sapiens contactin 6 (CNTN6), mRNA.
CNTN6 (uc003boz.3) at chr3:1134620-1445278 - Homo sapiens contactin 6 (CNTN6), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001289081.1 at chr3:1134342-1445294
NM_001289080.1 at chr3:1134342-1445294
NM_014461.3 at chr3:1134342-1445294

RefSeq Genes

CNTN6 at chr3:1134708-1445901 - (NM_001349360) contactin-6 isoform 6
CNTN6 at chr3:1134708-1445901 - (NM_001349356) contactin-6 isoform 3 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349362) contactin-6 isoform 6
CNTN6 at chr3:1134708-1445901 - (NM_001349361) contactin-6 isoform 6
CNTN6 at chr3:1134708-1445901 - (NM_001349357) contactin-6 isoform 4 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349359) contactin-6 isoform 6
CNTN6 at chr3:1134708-1445901 - (NM_001349358) contactin-6 isoform 5 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349353) contactin-6 isoform 1 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349350) contactin-6 isoform 1 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349351) contactin-6 isoform 1 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349354) contactin-6 isoform 1 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349355) contactin-6 isoform 1 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001349352) contactin-6 isoform 1 precursor
CNTN6 at chr3:1134708-1445901 - (NM_014461) contactin-6 isoform 1 precursor
CNTN6 at chr3:1134708-1445901 - (NM_001289081) contactin-6 isoform 2
CNTN6 at chr3:1134708-1445901 - (NM_001289080) contactin-6 isoform 1 precursor

Non-Human RefSeq Genes

CNTN6 at chr3:1134629-1445250 - (NM_001191459) contactin-6 precursor
Cntn6 at chr3:1134703-1445215 - (NM_013225) contactin-6 precursor
Cntn6 at chr3:1134576-1445280 - (NM_017383) contactin-6 precursor
CNTN6 at chr3:1134457-1445899 - (NM_001131086) contactin-6 precursor

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134708-1445901

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1134708-1445901
CNTN6 at chr3:1442969-1444485

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134345-1445278

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1442969-1444485

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134345-1445278

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1442969-1444485

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134345-1445278

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1442969-1444485

Basic Gene Annotation Set from GENCODE Version 19

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278

Comprehensive Gene Annotation Set from GENCODE Version 19

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1442969-1444485

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1442969-1444485

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1442969-1444485

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CNTN6 at chr3:1134260-1445901
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134342-1445126
CNTN6 at chr3:1134345-1445278
CNTN6 at chr3:1134406-1189651
CNTN6 at chr3:1134708-1340053
CNTN6 at chr3:1442969-1444485

International Knockout Mouse Consortium Genes Mapped to Human Genome

Cntn6_33960 at chr3:1134629-1445278
Cntn6_VG14310 at chr3:1134629-1445278

BC113118 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 3343  100.0%          3     +   1134707   1445178  BC113118     1  3343  3343

BC076594 Alignments in Non-Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 3485   87.1%          3     ++   1134576   1445280  BC076594     1  3574  3613

Ensembl Genes

CNTN6 at chr3:1134708-1340053 - (ENST00000394261)
CNTN6 at chr3:1134345-1445278 - (ENST00000350110)
CNTN6 at chr3:1134342-1445126 - (ENST00000539053)
CNTN6 at chr3:1134260-1445901 - (ENST00000446702)
CNTN6 at chr3:1134342-1445126 - (ENST00000397479)
CNTN6 at chr3:1134406-1189651 - (ENST00000413210)
CNTN6 at chr3:1442969-1444485 - (ENST00000485257)

Vega Protein-Coding Annotations

OTTHUMT00000239235 at chr3:1134260-1445901
OTTHUMT00000337488 at chr3:1134342-1445126
OTTHUMT00000337490 at chr3:1134345-1445278
OTTHUMT00000337491 at chr3:1134406-1189651
OTTHUMT00000337489 at chr3:1134708-1340053
OTTHUMT00000337492 at chr3:1442969-1444485