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Gencode Genes

CLN6 (ENST00000249806.11) at chr15:68206992-68229728 - Homo sapiens CLN6 transmembrane ER protein (CLN6), mRNA. (from RefSeq NM_017882)
CLN6 (ENST00000638144.1) at chr15:68208143-68248383 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000638076.1) at chr15:68207030-68229742 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000637823.1) at chr15:68208184-68229510 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000637667.1) at chr15:68208222-68229703 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000637494.1) at chr15:68208116-68229677 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000637450.1) at chr15:68208186-68229677 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000637329.1) at chr15:68207841-68218644 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000637223.1) at chr15:68209703-68257021 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000636964.1) at chr15:68207269-68213332 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000636876.1) at chr15:68218566-68257131 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000636674.1) at chr15:68208173-68213143 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000636314.1) at chr15:68209672-68229700 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000636212.1) at chr15:68208149-68229713 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000636020.1) at chr15:68213825-68229716 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000635754.1) at chr15:68214168-68215608 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000635747.1) at chr15:68208113-68256997 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000569336.2) at chr15:68218086-68218642 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000567060.5) at chr15:68207933-68229670 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BNF1)
CLN6 (ENST00000566347.5) at chr15:68208040-68229718 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000565471.6) at chr15:68207630-68229672 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BTY4)
CLN6 (ENST00000564846.1) at chr15:68213257-68257211 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000564752.1) at chr15:68208327-68229709 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BUV4)
CLN6 (ENST00000563917.2) at chr15:68208361-68248393 - CLN6, transmembrane ER protein (from HGNC CLN6)
CLN6 (ENST00000538696.5) at chr15:68208067-68257106 - Interacts with CRMP2. (from UniProt Q9NWW5)
DPYSL2 (ENST00000311151.9) at chr8:26577843-26658178 - Homo sapiens dihydropyrimidinase like 2 (DPYSL2), transcript variant 2, mRNA. (from RefSeq NM_001386)
DPYSL2 (ENST00000523027.1) at chr8:26578405-26656027 - Homo sapiens dihydropyrimidinase like 2 (DPYSL2), transcript variant 3, mRNA. (from RefSeq NM_001244604)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_017882.3 at chr15:68206992-68229728

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

CLN6 at chr15:68206992-68229728

RefSeq Genes

CLN6 at chr15:68206992-68229728 - (NM_017882) ceroid-lipofuscinosis neuronal protein 6

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

CLN6 transmembrane ER protein at chr15:68206992-68229728 - (NM_017882.3)

Non-Human RefSeq Genes

cln6 at chr15:68208140-68218619 - (NM_001126758) ceroid-lipofuscinosis neuronal protein 6
Cln6 at chr15:68208152-68229580 - (NM_001191794) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68208151-68218616 - (NM_001277628) ceroid-lipofuscinosis neuronal protein 6
Cln6 at chr15:68207841-68229582 - (NM_001033175) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68207727-68229609 - (NM_001243614) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68207508-68229598 - (NM_001011888) ceroid-lipofuscinosis neuronal protein 6 homolog
CLN6 at chr15:68207701-68229584 - (NM_001109984) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68208149-68229584 - (NM_001040289) ceroid-lipofuscinosis neuronal protein 6
cln6a at chr15:68208158-68218607 - (NM_001005982) CLN6 transmembrane ER protein a

Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

CLN6 at chr15:68206992-68229728
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209672-68229700

Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)

CLN6 at chr15:68206992-68229728
CLN6 at chr15:68207030-68229742
CLN6 at chr15:68207269-68213332
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68207841-68218644
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208113-68256997
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208143-68248383
CLN6 at chr15:68208149-68229713
CLN6 at chr15:68208173-68213143
CLN6 at chr15:68208184-68229510
CLN6 at chr15:68208186-68229677
CLN6 at chr15:68208222-68229703
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68208361-68248393
CLN6 at chr15:68209672-68229700
CLN6 at chr15:68209703-68257021
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68213825-68229716
CLN6 at chr15:68214168-68215608
CLN6 at chr15:68218086-68218642
CLN6 at chr15:68218566-68257131

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CLN6 at chr15:68206992-68229728
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209672-68229700

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CLN6 at chr15:68206992-68229728
CLN6 at chr15:68207030-68229742
CLN6 at chr15:68207269-68213332
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68207841-68218644
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208113-68256997
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208143-68248383
CLN6 at chr15:68208149-68229713
CLN6 at chr15:68208173-68213143
CLN6 at chr15:68208184-68229510
CLN6 at chr15:68208186-68229677
CLN6 at chr15:68208222-68229703
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68208361-68248393
CLN6 at chr15:68209672-68229700
CLN6 at chr15:68209703-68257021
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68213825-68229716
CLN6 at chr15:68214168-68215608
CLN6 at chr15:68218086-68218642
CLN6 at chr15:68218566-68257131

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209672-68229700

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207030-68229742
CLN6 at chr15:68207269-68213332
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68207841-68218644
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208113-68256997
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208143-68248383
CLN6 at chr15:68208149-68229713
CLN6 at chr15:68208173-68213143
CLN6 at chr15:68208184-68229510
CLN6 at chr15:68208186-68229677
CLN6 at chr15:68208222-68229703
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68208361-68248393
CLN6 at chr15:68209672-68229700
CLN6 at chr15:68209703-68257021
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68213825-68229716
CLN6 at chr15:68214168-68215608
CLN6 at chr15:68218086-68218642
CLN6 at chr15:68218566-68257131

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209672-68229700

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207030-68229742
CLN6 at chr15:68207269-68213332
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68207841-68218644
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208113-68256997
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208143-68248383
CLN6 at chr15:68208149-68229713
CLN6 at chr15:68208173-68213143
CLN6 at chr15:68208184-68229510
CLN6 at chr15:68208186-68229677
CLN6 at chr15:68208222-68229703
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68208361-68248393
CLN6 at chr15:68209672-68229700
CLN6 at chr15:68209703-68257021
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68213825-68229716
CLN6 at chr15:68214168-68215608
CLN6 at chr15:68218086-68218642
CLN6 at chr15:68218566-68257131

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209672-68229700

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207030-68229742
CLN6 at chr15:68207269-68213332
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68207841-68218644
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208113-68256997
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208143-68248383
CLN6 at chr15:68208149-68229713
CLN6 at chr15:68208173-68213143
CLN6 at chr15:68208184-68229510
CLN6 at chr15:68208186-68229677
CLN6 at chr15:68208222-68229703
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68208361-68248393
CLN6 at chr15:68209672-68229700
CLN6 at chr15:68209703-68257021
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68213825-68229716
CLN6 at chr15:68214168-68215608
CLN6 at chr15:68218086-68218642
CLN6 at chr15:68218566-68257131

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209672-68229700

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207030-68229742
CLN6 at chr15:68207269-68213332
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68207841-68218644
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208113-68256997
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208143-68248383
CLN6 at chr15:68208149-68229713
CLN6 at chr15:68208173-68213143
CLN6 at chr15:68208184-68229510
CLN6 at chr15:68208186-68229677
CLN6 at chr15:68208222-68229703
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68208361-68248393
CLN6 at chr15:68209672-68229700
CLN6 at chr15:68209703-68257021
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68213825-68229716
CLN6 at chr15:68214168-68215608
CLN6 at chr15:68218086-68218642
CLN6 at chr15:68218566-68257131

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209672-68229700

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CLN6 at chr15:68206992-68229743
CLN6 at chr15:68207030-68229742
CLN6 at chr15:68207269-68213332
CLN6 at chr15:68207630-68229672
CLN6 at chr15:68207841-68218644
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208113-68256997
CLN6 at chr15:68208116-68229677
CLN6 at chr15:68208143-68248383
CLN6 at chr15:68208149-68229713
CLN6 at chr15:68208173-68213143
CLN6 at chr15:68208184-68229510
CLN6 at chr15:68208186-68229677
CLN6 at chr15:68208222-68229703
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68208361-68248393
CLN6 at chr15:68209672-68229700
CLN6 at chr15:68209703-68257021
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68213825-68229716
CLN6 at chr15:68214168-68215608
CLN6 at chr15:68218086-68218642
CLN6 at chr15:68218566-68257131

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209626-68214367
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68217413-68229670

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209626-68214367
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68217413-68229670

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209626-68214367
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68217413-68229670

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CLN6 at chr15:68206992-68229742
CLN6 at chr15:68207630-68229671
CLN6 at chr15:68207933-68229670
CLN6 at chr15:68208040-68229718
CLN6 at chr15:68208067-68257106
CLN6 at chr15:68208327-68229709
CLN6 at chr15:68209626-68214367
CLN6 at chr15:68213257-68257211
CLN6 at chr15:68217413-68229670

International Knockout Mouse Consortium Genes Mapped to Human Genome

Cln6_33967 at chr15:68206992-68229742
Cln6_33968 at chr15:68206992-68229742
Cln6_75795 at chr15:68206992-68229742
Cln6_89322 at chr15:68206992-68229742
Cln6_VG17229 at chr15:68206992-68229742

Human Aligned mRNA Search Results

KU178671 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 1 (CLN6) mRNA, partial cds.
KU178672 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 2 (CLN6) mRNA, complete cds, alternatively spliced.
KU178673 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 4 (CLN6) mRNA, partial cds, alternatively spliced.
KU178674 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 5 (CLN6) mRNA, partial cds, alternatively spliced.
BC010849 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:8851 IMAGE:3878776), complete cds.
BC013130 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:21605 IMAGE:4517748), complete cds.
CR457244 - Homo sapiens full open reading frame cDNA clone RZPDo834F0912D for gene CLN6, ceroid-lipofuscinosis, neuronal 6, late infantile, variant; complete cds, incl. stopcodon.

Non-Human Aligned mRNA Search Results

BC164062 - Danio rerio ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:191237 IMAGE:100059546), complete cds.
BC116794 - Mus musculus ceroid-lipofuscinosis, neuronal 6, mRNA (cDNA clone IMAGE:40126113), partial cds.
BC116798 - Mus musculus ceroid-lipofuscinosis, neuronal 6, mRNA (cDNA clone IMAGE:40126117), partial cds.
DQ458790 - Ovis aries CLN6 (CLN6) mRNA, complete cds.
BC141471 - Synthetic construct Mus musculus clone IMAGE:100014707, MGC:175490 ceroid-lipofuscinosis, neuronal 6 (Cln6) mRNA, encodes complete protein.
BC148723 - Synthetic construct Mus musculus clone IMAGE:100015731, MGC:183414 ceroid-lipofuscinosis, neuronal 6 (Cln6) mRNA, encodes complete protein.
AJ875418 - Canis familiaris mRNA for ceroid-lipofuscinosis, neuronal 6 (cln6 gene).
BC083427 - Danio rerio ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:103565 IMAGE:7242005), complete cds.
JU326211 - TSA: Macaca mulatta Mamu_504779 mRNA sequence.
JU472054 - TSA: Macaca mulatta Mamu_373248 mRNA sequence.
JU472055 - TSA: Macaca mulatta Mamu_373249 mRNA sequence.
JV636243 - TSA: Macaca mulatta Mamu_461199 mRNA sequence.

GeneReviews

CLN6 at chr15:68208067-68257106

Pfam Domains in UCSC Genes

CLN6 at chr15:68197620-68229503