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UCSC Genes

CLN6 (uc002arf.3) at chr15:68499330-68522080 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant (CLN6), mRNA.
CLN6 (uc031qso.1) at chr15:68505595-68549549 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant (CLN6), mRNA.
CLN6 (uc010ujz.2) at chr15:68499330-68549444 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant (CLN6), mRNA.
CLN6 (uc010ujy.2) at chr15:68499330-68522080 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant (CLN6), mRNA.
DPYSL2 (uc011lah.2) at chr8:26435921-26515693 - Homo sapiens dihydropyrimidinase-like 2 (DPYSL2), transcript variant 3, mRNA.
DPYSL2 (uc003xfb.2) at chr8:26435340-26515693 - Homo sapiens dihydropyrimidinase-like 2 (DPYSL2), transcript variant 2, mRNA.
DPYSL2 (uc011lag.2) at chr8:26435340-26501120 - Homo sapiens dihydropyrimidinase-like 2 (DPYSL2), transcript variant 2, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_017882.2 at chr15:68499330-68522080

RefSeq Genes

CLN6 at chr15:68499330-68522066 - (NM_017882) ceroid-lipofuscinosis neuronal protein 6

Non-Human RefSeq Genes

cln6 at chr15:68500478-68510957 - (NM_001126758) ceroid-lipofuscinosis neuronal protein 6
Cln6 at chr15:68500490-68521920 - (NM_001191794) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68500490-68510954 - (NM_001277628) ceroid-lipofuscinosis neuronal protein 6
Cln6 at chr15:68500179-68521920 - (NM_001033175) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68500065-68521918 - (NM_001243614) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68499846-68521916 - (NM_001011888) ceroid-lipofuscinosis neuronal protein 6 homolog
CLN6 at chr15:68500065-68521922 - (NM_001109984) ceroid-lipofuscinosis neuronal protein 6
CLN6 at chr15:68500487-68521921 - (NM_001040289) ceroid-lipofuscinosis neuronal protein 6
cln6a at chr15:68500496-68510945 - (NM_001005982) CLN6 transmembrane ER protein a

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

CLN6 at chr15:68499330-68522066
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68502010-68522038

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

CLN6 at chr15:68499330-68522066
CLN6 at chr15:68499368-68522080
CLN6 at chr15:68499607-68505670
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500179-68510982
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500451-68549335
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500481-68540721
CLN6 at chr15:68500487-68522051
CLN6 at chr15:68500511-68505481
CLN6 at chr15:68500522-68521848
CLN6 at chr15:68500524-68522015
CLN6 at chr15:68500560-68522041
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68500699-68540731
CLN6 at chr15:68502010-68522038
CLN6 at chr15:68502041-68549359
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68506163-68522054
CLN6 at chr15:68506506-68507946
CLN6 at chr15:68510424-68510980
CLN6 at chr15:68510904-68549469

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CLN6 at chr15:68499330-68522066
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68502010-68522038

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CLN6 at chr15:68499330-68522066
CLN6 at chr15:68499368-68522080
CLN6 at chr15:68499607-68505670
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500179-68510982
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500451-68549335
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500481-68540721
CLN6 at chr15:68500487-68522051
CLN6 at chr15:68500511-68505481
CLN6 at chr15:68500522-68521848
CLN6 at chr15:68500524-68522015
CLN6 at chr15:68500560-68522041
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68500699-68540731
CLN6 at chr15:68502010-68522038
CLN6 at chr15:68502041-68549359
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68506163-68522054
CLN6 at chr15:68506506-68507946
CLN6 at chr15:68510424-68510980
CLN6 at chr15:68510904-68549469

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CLN6 at chr15:68499330-68522081
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68502010-68522038

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CLN6 at chr15:68499330-68522081
CLN6 at chr15:68499368-68522080
CLN6 at chr15:68499607-68505670
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500179-68510982
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500451-68549335
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500481-68540721
CLN6 at chr15:68500487-68522051
CLN6 at chr15:68500511-68505481
CLN6 at chr15:68500522-68521848
CLN6 at chr15:68500524-68522015
CLN6 at chr15:68500560-68522041
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68500699-68540731
CLN6 at chr15:68502010-68522038
CLN6 at chr15:68502041-68549359
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68506163-68522054
CLN6 at chr15:68506506-68507946
CLN6 at chr15:68510424-68510980
CLN6 at chr15:68510904-68549469

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CLN6 at chr15:68499330-68522081
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68502010-68522038

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CLN6 at chr15:68499330-68522081
CLN6 at chr15:68499368-68522080
CLN6 at chr15:68499607-68505670
CLN6 at chr15:68499968-68522010
CLN6 at chr15:68500179-68510982
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500451-68549335
CLN6 at chr15:68500454-68522015
CLN6 at chr15:68500481-68540721
CLN6 at chr15:68500487-68522051
CLN6 at chr15:68500511-68505481
CLN6 at chr15:68500522-68521848
CLN6 at chr15:68500524-68522015
CLN6 at chr15:68500560-68522041
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68500699-68540731
CLN6 at chr15:68502010-68522038
CLN6 at chr15:68502041-68549359
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68506163-68522054
CLN6 at chr15:68506506-68507946
CLN6 at chr15:68510424-68510980
CLN6 at chr15:68510904-68549469

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68501964-68506705
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68509751-68522008

Basic Gene Annotation Set from GENCODE Version 19

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68509751-68522008

Comprehensive Gene Annotation Set from GENCODE Version 19

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68501964-68506705
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68509751-68522008

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68509751-68522008

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68501964-68506705
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68509751-68522008

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68509751-68522008

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68499968-68522009
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500378-68522056
CLN6 at chr15:68500405-68549444
CLN6 at chr15:68500665-68522047
CLN6 at chr15:68501964-68506705
CLN6 at chr15:68505595-68549549
CLN6 at chr15:68509751-68522008

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500405-68549444

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CLN6 at chr15:68499330-68522080
CLN6 at chr15:68500271-68522008
CLN6 at chr15:68500405-68549444

International Knockout Mouse Consortium Genes Mapped to Human Genome

Cln6_33967 at chr15:68499330-68522080
Cln6_33968 at chr15:68499330-68522080
Cln6_75795 at chr15:68499330-68522080
Cln6_89322 at chr15:68499330-68522080
Cln6_VG17229 at chr15:68499330-68522080

Human Aligned mRNA Search Results

KU178671 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 1 (CLN6) mRNA, partial cds.
KU178672 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 2 (CLN6) mRNA, complete cds, alternatively spliced.
KU178673 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 4 (CLN6) mRNA, partial cds, alternatively spliced.
KU178674 - Homo sapiens ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 5 (CLN6) mRNA, partial cds, alternatively spliced.
BC010849 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:8851 IMAGE:3878776), complete cds.
BC013130 - Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:21605 IMAGE:4517748), complete cds.
CR457244 - Homo sapiens full open reading frame cDNA clone RZPDo834F0912D for gene CLN6, ceroid-lipofuscinosis, neuronal 6, late infantile, variant; complete cds, incl. stopcodon.

Non-Human Aligned mRNA Search Results

BC164062 - Danio rerio ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:191237 IMAGE:100059546), complete cds.
BC116794 - Mus musculus ceroid-lipofuscinosis, neuronal 6, mRNA (cDNA clone IMAGE:40126113), partial cds.
BC116798 - Mus musculus ceroid-lipofuscinosis, neuronal 6, mRNA (cDNA clone IMAGE:40126117), partial cds.
DQ458790 - Ovis aries CLN6 (CLN6) mRNA, complete cds.
BC141471 - Synthetic construct Mus musculus clone IMAGE:100014707, MGC:175490 ceroid-lipofuscinosis, neuronal 6 (Cln6) mRNA, encodes complete protein.
BC148723 - Synthetic construct Mus musculus clone IMAGE:100015731, MGC:183414 ceroid-lipofuscinosis, neuronal 6 (Cln6) mRNA, encodes complete protein.
AJ875418 - Canis familiaris mRNA for ceroid-lipofuscinosis, neuronal 6 (cln6 gene).
BC083427 - Danio rerio ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:103565 IMAGE:7242005), complete cds.
JU326211 - TSA: Macaca mulatta Mamu_504779 mRNA sequence.
JU472054 - TSA: Macaca mulatta Mamu_373248 mRNA sequence.
JU472055 - TSA: Macaca mulatta Mamu_373249 mRNA sequence.
JV636243 - TSA: Macaca mulatta Mamu_461199 mRNA sequence.

Ensembl Genes

CLN6 at chr15:68505595-68549549 - (ENST00000564846)
CLN6 at chr15:68500665-68522047 - (ENST00000564752)
CLN6 at chr15:68500378-68522056 - (ENST00000566347)
CLN6 at chr15:68500271-68522008 - (ENST00000418702)
CLN6 at chr15:68499330-68522080 - (ENST00000249806)
CLN6 at chr15:68499968-68522009 - (ENST00000565471)
CLN6 at chr15:68500271-68522008 - (ENST00000567060)
CLN6 at chr15:68500405-68549444 - (ENST00000538696)
CLN6 at chr15:68501964-68506705 - (ENST00000563917)
CLN6 at chr15:68509751-68522008 - (ENST00000569336)

GeneReviews

CLN6 at chr15:68499330-68549444

Vega Protein-Coding Annotations

OTTHUMT00000257066 at chr15:68499330-68522080

Pfam Domains in UCSC Genes

CLN6 at chr15:68500490-68510978