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Gencode Genes

CLCN5 (ENST00000643129.1) at chrX:50042338-50092660 - chloride voltage-gated channel 5 (from HGNC CLCN5)
CLCN5 (ENST00000646398.1) at chrX:50069555-50092894 - chloride voltage-gated channel 5 (from HGNC CLCN5)
CLCN5 (ENST00000642885.1) at chrX:50067964-50092660 - Proton-coupled chloride transporter. Functions as  antiport system and exchanges chloride ions against protons.  Important for normal acidification of the endosome lumen. May play  an important role in renal tubular function. (from UniProt P51795)
CLCN5 (ENST00000642383.1) at chrX:50081665-50092660 - chloride voltage-gated channel 5 (from HGNC CLCN5)
CLCN5 (ENST00000482218.2) at chrX:49923404-50042541 - Homo sapiens chloride voltage-gated channel 5 (CLCN5), transcript variant 5, mRNA. (from RefSeq NM_001272102)
CLCN5 (ENST00000376108.7) at chrX:50067576-50092406 - Homo sapiens chloride voltage-gated channel 5 (CLCN5), transcript variant 3, mRNA. (from RefSeq NM_000084)
CLCN5 (ENST00000376091.8) at chrX:49922596-50099230 - Homo sapiens chloride voltage-gated channel 5 (CLCN5), transcript variant 2, mRNA. (from RefSeq NM_001127898)
CLCN5 (ENST00000376088.7) at chrX:49922615-50099235 - Homo sapiens chloride voltage-gated channel 5 (CLCN5), transcript variant 1, mRNA. (from RefSeq NM_001127899)
CLCN5 (ENST00000307367.2) at chrX:50069501-50092864 - Homo sapiens chloride voltage-gated channel 5 (CLCN5), transcript variant 4, mRNA. (from RefSeq NM_001282163)
NEDD4L (ENST00000256830.13) at chr18:58044661-58396573 - E3 ubiquitin-protein ligase which accepts ubiquitin from  an E2 ubiquitin-conjugating enzyme in the form of a thioester and  then directly transfers the ubiquitin to targeted substrates.  Inhibits TGF-beta signaling by triggering SMAD2 and TGFBR1  ubiquitination and proteasome-dependent degradation. Promotes  ubiquitination and internalization of various plasma membrane  channels such as ENaC, Nav1.2, Nav1.3, Nav1.5, Nav1.7, Nav1.8,  Kv1.3, EAAT1 or CLC5. Promotes ubiquitination and degradation of  SGK1 and TNK2. (from UniProt Q96PU5)
NEDD4L (ENST00000456986.5) at chr18:58047226-58401540 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant f, mRNA. (from RefSeq NM_001144965)
NEDD4L (ENST00000586263.5) at chr18:58149337-58396573 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant h, mRNA. (from RefSeq NM_001144969)
NEDD4L (ENST00000435432.6) at chr18:58149333-58396551 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant k, mRNA. (from RefSeq NM_001144971)
NEDD4L (ENST00000357895.9) at chr18:58149333-58396705 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant g, mRNA. (from RefSeq NM_001144968)
NEDD4L (ENST00000456173.6) at chr18:58195390-58398157 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant c, mRNA. (from RefSeq NM_001144970)
NEDD4L (ENST00000431212.6) at chr18:58221535-58396578 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant a, mRNA. (from RefSeq NM_001144966)
NEDD4L (ENST00000382850.8) at chr18:58044548-58401539 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant d, mRNA. (from RefSeq NM_015277)
NEDD4L (ENST00000356462.10) at chr18:58044367-58396574 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant i, mRNA. (from RefSeq NM_001243960)
NEDD4L (ENST00000400345.8) at chr18:58044226-58401539 - Homo sapiens NEDD4 like E3 ubiquitin protein ligase (NEDD4L), transcript variant j, mRNA. (from RefSeq NM_001144967)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001272102.1 at chrX:49922615-50042541
NM_001127898.3 at chrX:49922615-50099235
NM_001127899.3 at chrX:49922615-50099235
NM_000084.4 at chrX:50067560-50099235
NM_001282163.1 at chrX:50069501-50099235

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_017029258.1 at chrX:49922615-50099231
XM_017029257.1 at chrX:49922665-50099231

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

CLCN5 at chrX:49922596-50099230

RefSeq Genes

CLCN5 at chrX:49922596-50042541 - (NM_001272102) H(+)/Cl(-) exchange transporter 5 isoform c
CLCN5 at chrX:50067588-50099230 - (NM_000084) H(+)/Cl(-) exchange transporter 5 isoform b
CLCN5 at chrX:49922596-50099230 - (NM_001127899) H(+)/Cl(-) exchange transporter 5 isoform a
CLCN5 at chrX:50069501-50099235 - (NM_001282163) H(+)/Cl(-) exchange transporter 5 isoform d
CLCN5 at chrX:49922596-50099230 - (NM_001127898) H(+)/Cl(-) exchange transporter 5 isoform a

Non-Human RefSeq Genes

Clcn5 at chrX:50069900-50092224 - (NM_001172931) H(+)/Cl(-) exchange transporter 5
CLCN5 at chrX:50069926-50092219 - (NM_001082068) H(+)/Cl(-) exchange transporter 5
clcn5 at chrX:50069950-50092219 - (NM_001045745) H(+)/Cl(-) exchange transporter 5
Clcn5 at chrX:50067575-50093566 - (NM_016691) H(+)/Cl(-) exchange transporter 5 isoform 1
Clcn5 at chrX:49922538-50093566 - (NM_001243762) H(+)/Cl(-) exchange transporter 5 isoform 2
CLCN5 at chrX:50069877-50092219 - (NM_214139) H(+)/Cl(-) exchange transporter 5
CLCN5 at chrX:50067590-50093764 - (NM_001133871) H(+)/Cl(-) exchange transporter 5
Clcn5 at chrX:50067662-50092307 - (NM_017106) H(+)/Cl(-) exchange transporter 5
clcn5.L at chrX:50069950-50092219 - (NM_001087500) chloride channel, voltage-sensitive 5 L homeolog

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CLCN5 at chrX:49922596-50099230
CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50067964-50092660
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CLCN5 at chrX:49922596-50099230
CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50042338-50092660
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50067964-50092660
CLCN5 at chrX:50069501-50092864
CLCN5 at chrX:50069555-50092894
CLCN5 at chrX:50081665-50092660

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50067964-50092660
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50042338-50092660
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50067964-50092660
CLCN5 at chrX:50069501-50092864
CLCN5 at chrX:50069555-50092894
CLCN5 at chrX:50081665-50092660

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50067964-50092660
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50042338-50092660
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50067964-50092660
CLCN5 at chrX:50069501-50092864
CLCN5 at chrX:50069555-50092894
CLCN5 at chrX:50081665-50092660

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CLCN5 at chrX:49922615-50099235
CLCN5 at chrX:49922665-50092482
CLCN5 at chrX:49923404-50042541
CLCN5 at chrX:50067576-50092406
CLCN5 at chrX:50069501-50092864

International Knockout Mouse Consortium Genes Mapped to Human Genome

Clcn5_32707 at chrX:49922615-50099235
Clcn5_32708 at chrX:49922615-50099235
Clcn5_65786 at chrX:49922615-50099235
Clcn5_76352 at chrX:49922615-50099235
Clcn5_82521 at chrX:49922615-50099235

Human Aligned mRNA Search Results

BC130429 - Homo sapiens chloride channel 5, mRNA (cDNA clone MGC:163301 IMAGE:40146460), complete cds.
BC130431 - Homo sapiens chloride channel 5, mRNA (cDNA clone MGC:163303 IMAGE:40146462), complete cds.
X91906 - H.sapiens voltage-gated chloride ion channel CLCN5.
AK290940 - Homo sapiens cDNA FLJ77943 complete cds, highly similar to Homo sapiens chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease) (CLCN5), mRNA.

Non-Human Aligned mRNA Search Results

BC130105 - Xenopus laevis chloride channel 5, mRNA (cDNA clone IMAGE:5129396), partial cds.
AF326968 - Cavia porcellus chloride channel CLCN5 mRNA, complete cds.
BC157728 - Xenopus laevis chloride channel 5, mRNA (cDNA clone MGC:181820 IMAGE:7974476), complete cds.
BC170157 - Xenopus laevis chloride channel 5, mRNA (cDNA clone MGC:196884 IMAGE:9093538), complete cds.
BC170161 - Xenopus laevis chloride channel 5, mRNA (cDNA clone MGC:196888 IMAGE:9093542), complete cds.
AF134117 - Mus musculus chloride channel 5 (Clcn5) mRNA, complete cds.
BC036347 - Mus musculus chloride channel 5, mRNA (cDNA clone MGC:35965 IMAGE:3989812), complete cds.
AJ810447 - Bos taurus partial mRNA for chloride channel protein 5 (clcn5 gene).
CR942488 - Xenopus tropicalis finished cDNA, clone TEgg016f13.
AF195523 - Oryctolagus cuniculus chloride channel CLC-5 (CLCN5) mRNA, complete cds.
JT412489 - TSA: Ictalurus punctatus clc_556492 mRNA sequence.
JT416366 - TSA: Ictalurus punctatus aby_k59:909407 mRNA sequence.
JU331151 - TSA: Macaca mulatta Mamu_532099 mRNA sequence.
MH203229 - Takifugu rubripes voltage-gated chloride channel 5 (CLCN5) mRNA, complete cds.

GeneReviews

CLCN5 at chrX:49922596-50099230