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UCSC Genes

CLCN5 (uc004doq.1) at chrX:49687225-49863892 - Homo sapiens chloride channel, voltage-sensitive 5 (CLCN5), transcript variant 2, mRNA.
CLCN5 (uc031tjo.1) at chrX:49834156-49863892 - Homo sapiens chloride channel, voltage-sensitive 5 (CLCN5), transcript variant 4, non-coding RNA.
CLCN5 (uc031tjn.1) at chrX:49687225-49807150 - Homo sapiens chloride channel, voltage-sensitive 5 (CLCN5), transcript variant 5, mRNA.
CLCN5 (uc004dot.1) at chrX:49834165-49863892 - Homo sapiens chloride channel, voltage-sensitive 5 (CLCN5), transcript variant 4, non-coding RNA.
CLCN5 (uc004dos.1) at chrX:49832215-49863892 - Homo sapiens chloride channel, voltage-sensitive 5 (CLCN5), transcript variant 3, mRNA.
CLCN5 (uc004dor.1) at chrX:49687225-49863892 - Homo sapiens chloride channel, voltage-sensitive 5 (CLCN5), transcript variant 1, mRNA.
NEDD4L (uc002lgy.3) at chr18:55711610-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant j, mRNA.
NEDD4L (uc010xee.1) at chr18:55714458-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant b, mRNA.
NEDD4L (uc002lhg.3) at chr18:55888754-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant a, mRNA.
NEDD4L (uc002lhd.2) at chr18:55816565-56068772 - Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase (NEDD4L), transcript variant f, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001272102.1 at chrX:49687225-49807150
NM_001127898.3 at chrX:49687225-49863892
NM_001127899.3 at chrX:49687225-49863892
NM_000084.4 at chrX:49832215-49863892
NM_001282163.1 at chrX:49834156-49863892

RefSeq Genes

CLCN5 at chrX:49687206-49807150 - (NM_001272102) H(+)/Cl(-) exchange transporter 5 isoform c
CLCN5 at chrX:49832243-49863887 - (NM_000084) H(+)/Cl(-) exchange transporter 5 isoform b
CLCN5 at chrX:49687206-49863887 - (NM_001127899) H(+)/Cl(-) exchange transporter 5 isoform a
CLCN5 at chrX:49834156-49863892 - (NM_001282163) H(+)/Cl(-) exchange transporter 5 isoform d
CLCN5 at chrX:49687206-49863887 - (NM_001127898) H(+)/Cl(-) exchange transporter 5 isoform a

Non-Human RefSeq Genes

Clcn5 at chrX:49834555-49856881 - (NM_001172931) H(+)/Cl(-) exchange transporter 5
CLCN5 at chrX:49834581-49856876 - (NM_001082068) H(+)/Cl(-) exchange transporter 5
clcn5 at chrX:49807023-49856876 - (NM_001045745) H(+)/Cl(-) exchange transporter 5
Clcn5 at chrX:49832230-49858223 - (NM_016691) H(+)/Cl(-) exchange transporter 5 isoform 1
Clcn5 at chrX:49687148-49858223 - (NM_001243762) H(+)/Cl(-) exchange transporter 5 isoform 2
CLCN5 at chrX:49834532-49856876 - (NM_214139) H(+)/Cl(-) exchange transporter 5
CLCN5 at chrX:49832245-49858421 - (NM_001133871) H(+)/Cl(-) exchange transporter 5
Clcn5 at chrX:49832317-49856964 - (NM_017106) H(+)/Cl(-) exchange transporter 5
clcn5.L at chrX:49807023-49856876 - (NM_001087500) chloride channel, voltage-sensitive 5 L homeolog

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CLCN5 at chrX:49687206-49863887
CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49832619-49857317
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CLCN5 at chrX:49687206-49863887
CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49806947-49857317
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49832619-49857317
CLCN5 at chrX:49834156-49857521
CLCN5 at chrX:49834210-49857551
CLCN5 at chrX:49846322-49857317

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49832619-49857317
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49806947-49857317
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49832619-49857317
CLCN5 at chrX:49834156-49857521
CLCN5 at chrX:49834210-49857551
CLCN5 at chrX:49846322-49857317

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Basic Gene Annotation Set from GENCODE Version 19

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from GENCODE Version 19

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49688013-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49687398-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49687398-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49687398-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49687398-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CLCN5 at chrX:49687225-49857139
CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49687398-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CLCN5 at chrX:49687225-49857139
CLCN5 at chrX:49687225-49863892
CLCN5 at chrX:49687275-49857139
CLCN5 at chrX:49687398-49807150
CLCN5 at chrX:49832231-49857063
CLCN5 at chrX:49834156-49857521

International Knockout Mouse Consortium Genes Mapped to Human Genome

Clcn5_32707 at chrX:49687225-49863892
Clcn5_32708 at chrX:49687225-49863892
Clcn5_65786 at chrX:49687225-49863892
Clcn5_76352 at chrX:49687225-49863892
Clcn5_82521 at chrX:49687225-49863892

Human Aligned mRNA Search Results

BC130429 - Homo sapiens chloride channel 5, mRNA (cDNA clone MGC:163301 IMAGE:40146460), complete cds.
BC130431 - Homo sapiens chloride channel 5, mRNA (cDNA clone MGC:163303 IMAGE:40146462), complete cds.
X91906 - H.sapiens voltage-gated chloride ion channel CLCN5.
AK290940 - Homo sapiens cDNA FLJ77943 complete cds, highly similar to Homo sapiens chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease) (CLCN5), mRNA.

Non-Human Aligned mRNA Search Results

BC130105 - Xenopus laevis chloride channel 5, mRNA (cDNA clone IMAGE:5129396), partial cds.
AF326968 - Cavia porcellus chloride channel CLCN5 mRNA, complete cds.
BC157728 - Xenopus laevis chloride channel 5, mRNA (cDNA clone MGC:181820 IMAGE:7974476), complete cds.
BC170157 - Xenopus laevis chloride channel 5, mRNA (cDNA clone MGC:196884 IMAGE:9093538), complete cds.
BC170161 - Xenopus laevis chloride channel 5, mRNA (cDNA clone MGC:196888 IMAGE:9093542), complete cds.
AF134117 - Mus musculus chloride channel 5 (Clcn5) mRNA, complete cds.
BC036347 - Mus musculus chloride channel 5, mRNA (cDNA clone MGC:35965 IMAGE:3989812), complete cds.
AJ810447 - Bos taurus partial mRNA for chloride channel protein 5 (clcn5 gene).
CR942488 - Xenopus tropicalis finished cDNA, clone TEgg016f13.
AF195523 - Oryctolagus cuniculus chloride channel CLC-5 (CLCN5) mRNA, complete cds.
JT412489 - TSA: Ictalurus punctatus clc_556492 mRNA sequence.
JT416366 - TSA: Ictalurus punctatus aby_k59:909407 mRNA sequence.
JU331151 - TSA: Macaca mulatta Mamu_532099 mRNA sequence.
MH203229 - Takifugu rubripes voltage-gated chloride channel 5 (CLCN5) mRNA, complete cds.

Ensembl Genes

CLCN5 at chrX:49832231-49857063 - (ENST00000376108)
CLCN5 at chrX:49687275-49857139 - (ENST00000376091)
CLCN5 at chrX:49687225-49863892 - (ENST00000376088)
CLCN5 at chrX:49688013-49807150 - (ENST00000482218)
CLCN5 at chrX:49834156-49857521 - (ENST00000307367)

GeneReviews

CLCN5 at chrX:49687225-49863892

Vega Protein-Coding Annotations

OTTHUMT00000056542 at chrX:49687225-49863892
OTTHUMT00000056543 at chrX:49687275-49857139
OTTHUMT00000109349 at chrX:49687398-49807150
OTTHUMT00000056545 at chrX:49832231-49857063
OTTHUMT00000056544 at chrX:49834156-49857521