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UCSC Genes

CIITA (uc002dai.4) at chr16:10971055-11018840 - Homo sapiens class II, major histocompatibility complex, transactivator (CIITA), mRNA.
CIITA (uc010bup.1) at chr16:10971055-11004116 - Homo sapiens class II, major histocompatibility complex, transactivator (CIITA), mRNA.
CIITA (uc002dak.4) at chr16:10971055-11018840 - Homo sapiens class II, major histocompatibility complex, transactivator (CIITA), mRNA.
CIITA (uc002daj.4) at chr16:10971055-11018840 - Homo sapiens class II, major histocompatibility complex, transactivator (CIITA), mRNA.
CIITA (uc002dah.2) at chr16:10971055-11002744 - Homo sapiens class II, major histocompatibility complex, transactivator (CIITA), mRNA.
CIITA (uc002dag.2) at chr16:10971055-11002744 - Homo sapiens class II, major histocompatibility complex, transactivator (CIITA), mRNA.
ZXDC (uc003eiv.3) at chr3:126156444-126194762 - Homo sapiens ZXD family zinc finger C (ZXDC), transcript variant 1, mRNA.
ZXDB (uc004dvd.3) at chrX:57618269-57623910 - Homo sapiens zinc finger, X-linked, duplicated B (ZXDB), mRNA.
ZXDA (uc004dve.3) at chrX:57931864-57937067 - Homo sapiens zinc finger, X-linked, duplicated A (ZXDA), mRNA.
HEXIM1 (uc002iig.3) at chr17:43224684-43229468 - Homo sapiens hexamethylene bis-acetamide inducible 1 (HEXIM1), mRNA.
RFX5 (uc001exw.1) at chr1:151313116-151319769 - Homo sapiens regulatory factor X, 5 (influences HLA class II expression) (RFX5), transcript variant 1, mRNA.
RFX5 (uc001exv.1) at chr1:151313116-151319769 - Homo sapiens regulatory factor X, 5 (influences HLA class II expression) (RFX5), transcript variant 2, mRNA.
RFXAP (uc001uvu.1) at chr13:37393339-37403740 - Homo sapiens regulatory factor X-associated protein (RFXAP), mRNA.
IRF1 (uc003kxa.2) at chr5:131817301-131826465 - Homo sapiens interferon regulatory factor 1 (IRF1), mRNA.
IRF1 (uc003kxb.2) at chr5:131817301-131831259 - Homo sapiens interferon regulatory factor 1 (IRF1), mRNA.
IL27 (uc002dqc.3) at chr16:28510683-28518155 - Homo sapiens interleukin 27 (IL27), mRNA.
SIRT1 (uc001jnd.3) at chr10:69644427-69678147 - Homo sapiens sirtuin 1 (SIRT1), transcript variant 1, mRNA.
SIRT1 (uc010qis.2) at chr10:69644939-69678147 - Homo sapiens sirtuin 1 (SIRT1), transcript variant 2, mRNA.
SIRT1 (uc009xpp.3) at chr10:69644939-69678147 - Homo sapiens sirtuin 1 (SIRT1), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001286403.1 at chr16:10971055-11018840
NR_104444.1 at chr16:10971055-11018840
NM_000246.3 at chr16:10971055-11018840
NM_001286402.1 at chr16:10971055-11018840

RefSeq Genes

CIITA at chr16:10971059-11030250 - (NR_104444) 
CIITA at chr16:10971055-11018840 - (NM_000246) MHC class II transactivator isoform 2
CIITA at chr16:10971059-11030250 - (NM_001286403) MHC class II transactivator isoform 3
CIITA at chr16:10971055-11018840 - (NM_001286402) MHC class II transactivator isoform 1

Non-Human RefSeq Genes

Ciita at chr16:10989150-11017868 - (NM_001270804) MHC class II transactivator isoform 3
Ciita at chr16:10960120-11017868 - (NM_053529) MHC class II transactivator isoform 1
Ciita at chr16:10989126-11017868 - (NM_001270803) MHC class II transactivator isoform 2
Ciita at chr16:10960063-11017868 - (NM_001302619) MHC class II transactivator isoform 5
Ciita at chr16:10989134-11017868 - (NM_001243761) MHC class II transactivator isoform 3
Ciita at chr16:10989144-11017868 - (NM_007575) MHC class II transactivator isoform 2
Ciita at chr16:10960063-11017868 - (NM_001302618) MHC class II transactivator isoform 4
Ciita at chr16:10960063-11017868 - (NM_001243760) MHC class II transactivator isoform 1

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11030245
CIITA at chr16:10971067-11018294

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

CIITA at chr16:10960079-10995961
CIITA at chr16:10960117-10995421
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11030245
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016024-11030245
CIITA at chr16:11016024-11036878
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079
CIITA at chr16:11034576-11036878

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11030245
CIITA at chr16:10971067-11018294

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CIITA at chr16:10960079-10995961
CIITA at chr16:10960117-10995421
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11030245
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016024-11030245
CIITA at chr16:11016024-11036878
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079
CIITA at chr16:11034576-11036878

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11030245
CIITA at chr16:10971067-11018294

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CIITA at chr16:10960079-10995961
CIITA at chr16:10960117-10995421
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11030245
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016024-11030245
CIITA at chr16:11016024-11036878
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079
CIITA at chr16:11034576-11036878

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11026138
CIITA at chr16:10971067-11018294

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CIITA at chr16:10960079-10995961
CIITA at chr16:10960117-10995421
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11026138
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11026138
CIITA at chr16:10971067-11018294
CIITA at chr16:10971073-11002744

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11018840
CIITA at chr16:10971055-11026138
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079

Basic Gene Annotation Set from GENCODE Version 19

CIITA at chr16:10971055-11023624
CIITA at chr16:10971067-11018294
CIITA at chr16:10971188-11004100

Comprehensive Gene Annotation Set from GENCODE Version 19

CIITA at chr16:10971055-11023624
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CIITA at chr16:10971055-11023624
CIITA at chr16:10971067-11018294
CIITA at chr16:10971188-11004100

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CIITA at chr16:10971055-11023624
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CIITA at chr16:10971055-11023624
CIITA at chr16:10971067-11018294
CIITA at chr16:10971188-11004100

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CIITA at chr16:10971055-11023624
CIITA at chr16:10971067-11018294
CIITA at chr16:10971067-11018661
CIITA at chr16:10971073-11002744
CIITA at chr16:10971080-10996579
CIITA at chr16:10971188-11004100
CIITA at chr16:10972826-10996017
CIITA at chr16:10995416-10995894
CIITA at chr16:11009503-11010867
CIITA at chr16:11016782-11017849
CIITA at chr16:11022021-11026079

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CIITA at chr16:10971039-11023624
CIITA at chr16:10971065-11018294
CIITA at chr16:10971073-11002744
CIITA at chr16:10971188-11004100

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CIITA at chr16:10971039-11023624
CIITA at chr16:10971065-11018294
CIITA at chr16:10971073-11002744
CIITA at chr16:10971188-11004100

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ciita_44041 at chr16:10971055-11018840
Ciita_84760 at chr16:10971055-11018840
Ciita_VG17035 at chr16:10971055-11018840

Human Aligned mRNA Search Results

AY699071 - Homo sapiens CIITA IV (MHC2TA) mRNA, complete cds.
AY084055 - Homo sapiens MHC class II transactivator CIITAlo mRNA, complete cds.
AY084054 - Homo sapiens MHC class II transactivator CIITAmed mRNA, complete cds.
U18259 - Human clone CIITA-8 MHC class II transactivator CIITA mRNA, complete cds.
U18288 - Human clone CIITA-10 MHC class II transactivator CIITA mRNA, complete cds.
X74301 - H.sapiens mRNA for MHC class II transactivator.
U31931 - Human class II MHC mutant RJ2.2.5 mRNA, allele CIITA, complete cds.
U18303 - Human clone CIITA-1.23 MHC class II transactivator CIITA mRNA, intronic insert sequence.
U18302 - Human clone CIITA-2.11 MHC class II transactivator CIITA mRNA, intronic insert sequence.

Non-Human Aligned mRNA Search Results

U60653 - Mus musculus classII MHC transactivator CIITA mRNA, complete cds.
AF100709 - Mus musculus MHC class II transactivator CIITA form I mRNA, complete cds.
AF042159 - Mus musculus MHC class II transactivator CIITA mRNA clone 4b, complete cds CIITA form IV.
AF100710 - Mus musculus MHC class II transactivator CIITA form IV mRNA, complete cds.
AF042158 - Mus musculus MHC class II transactivator CIITA form III mRNA, complete cds.
AY084053 - Sus scrofa MHC class II transactivator CIITA mRNA, complete cds.
U46562 - Mus musculus MHC class II transactivator CIITA mRNA, partial cds.
BC140358 - Synthetic construct Mus musculus clone IMAGE:100014312, MGC:173312 class II transactivator (Ciita) mRNA, encodes complete protein.
BC148699 - Synthetic construct Mus musculus clone IMAGE:100015714, MGC:183406 class II transactivator (Ciita) mRNA, encodes complete protein.
AF251305 - Rattus norvegicus MHC class II transactivator type I (CIITA) mRNA, complete cds.
AF251306 - Rattus norvegicus MHC class II transactivator type III (CIITA) mRNA, complete cds.
AF251307 - Rattus norvegicus MHC class II transactivator type IV (CIITA) mRNA, complete cds.
JU475652 - TSA: Macaca mulatta Mamu_365269 mRNA sequence.

Ensembl Genes

CIITA at chr16:11016782-11017849 - (ENST00000575513)
CIITA at chr16:10995416-10995894 - (ENST00000571190)
CIITA at chr16:10971188-11004100 - (ENST00000537380)
CIITA at chr16:10971073-11002744 - (ENST00000573309)
CIITA at chr16:10971067-11018661 - (ENST00000570546)
CIITA at chr16:10971055-11023624 - (ENST00000324288)
CIITA at chr16:10971067-11018294 - (ENST00000381835)
CIITA at chr16:10971080-10996579 - (ENST00000571186)
CIITA at chr16:10972826-10996017 - (ENST00000576601)
CIITA at chr16:11009503-11010867 - (ENST00000572665)
CIITA at chr16:11022021-11026079 - (ENST00000571545)

Vega Protein-Coding Annotations

OTTHUMT00000251966 at chr16:10971039-11023624