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Gencode Genes

CHD9 (ENST00000566029.5) at chr16:53055033-53329150 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 2, mRNA. (from RefSeq NM_025134)
CHD9 (ENST00000615216.4) at chr16:53055033-53327501 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000569794.1) at chr16:53208032-53209813 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000569225.5) at chr16:53235137-53248163 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000565832.5) at chr16:53099160-53222755 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BSP3)
CHD9 (ENST00000565803.2) at chr16:53207989-53326856 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 5, mRNA. (from RefSeq NM_001352157)
CHD9 (ENST00000565442.1) at chr16:53208451-53222755 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BRU9)
CHD9 (ENST00000565119.1) at chr16:53245733-53250649 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000564845.5) at chr16:53130921-53327451 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 3, mRNA. (from RefSeq NM_001352127)
CHD9 (ENST00000564641.1) at chr16:53314867-53324141 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3KRH9)
CHD9 (ENST00000564600.6) at chr16:53314506-53321563 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt J3KSW5)
CHD9 (ENST00000564582.2) at chr16:53099180-53122178 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000564255.5) at chr16:53157164-53250175 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000563410.1) at chr16:53131134-53156248 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt H3BV31)
CHD9 (ENST00000562806.1) at chr16:53249901-53254671 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000562791.1) at chr16:53209780-53226403 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000562785.1) at chr16:53156006-53157462 - The sequence shown here is derived from an Ensembl  automatic analysis pipeline and should be considered as  preliminary data. (from UniProt I3L340)
CHD9 (ENST00000561869.1) at chr16:53055039-53121980 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
CHD9 (ENST00000447540.5) at chr16:53055033-53327501 - Acts as a transcriptional coactivator for PPARA and  possibly other nuclear receptors. Proposed to be a ATP-dependent  chromatin remodeling protein. Has DNA-dependent ATPase activity  and binds to A/T-rich DNA. Associates with A/T-rich regulatory  regions in promoters of genes that participate in the  differentiation of progenitors during osteogenesis (By  similarity). (from UniProt Q3L8U1)
CHD9 (ENST00000398510.7) at chr16:53156003-53327451 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), transcript variant 1, mRNA. (from RefSeq NM_001308319)
CHD9 (ENST00000219084.10) at chr16:53235137-53327451 - chromodomain helicase DNA binding protein 9 (from HGNC CHD9)
PPARA (ENST00000402126.1) at chr22:46176748-46235403 - Ligand-activated transcription factor. Key regulator of  lipid metabolism. Activated by the endogenous ligand 1-palmitoyl-  2-oleoyl-sn-glycerol-3-phosphocholine (16:0/18:1-GPC). Activated  by oleylethanolamide, a naturally occurring lipid that regulates  satiety (By similarity). Receptor for peroxisome proliferators  such as hypolipidemic drugs and fatty acids. Regulates the  peroxisomal beta-oxidation pathway of fatty acids. Functions as  transcription activator for the ACOX1 and P450 genes.  Transactivation activity requires heterodimerization with RXRA and  is antagonized by NR2C2. (from UniProt Q07869)
PPARA (ENST00000262735.9) at chr22:46150596-46243756 - Homo sapiens peroxisome proliferator activated receptor alpha (PPARA), transcript variant 3, mRNA. (from RefSeq NM_001001928)
PPARA (ENST00000407236.5) at chr22:46151884-46243755 - Homo sapiens peroxisome proliferator activated receptor alpha (PPARA), transcript variant 5, mRNA. (from RefSeq NM_005036)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_025134.5 at chr16:53054993-53327502
NM_001352127.1 at chr16:53130748-53327502
NM_001308319.1 at chr16:53155926-53327502
NM_001352157.1 at chr16:53207945-53327502
NM_001352156.1 at chr16:53207945-53327502
NM_001352158.1 at chr16:53208456-53327502

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_005256168.4 at chr16:53054982-53327502
XM_024450459.1 at chr16:53054991-53327502
XM_017023719.1 at chr16:53055038-53327502
XM_017023720.1 at chr16:53055047-53327502
XM_005256169.2 at chr16:53099160-53327502
XM_011523347.2 at chr16:53130996-53327502
XM_006721281.2 at chr16:53131033-53327502
XM_017023725.1 at chr16:53131033-53327502
XM_017023724.1 at chr16:53131033-53327502
XM_006721283.3 at chr16:53131052-53327502
XM_017023722.2 at chr16:53141088-53326525
XM_017023723.2 at chr16:53141088-53327178
XR_001751995.2 at chr16:53141089-53327502
XM_017023721.1 at chr16:53141089-53327502
XM_017023718.2 at chr16:53141089-53327502
XR_001751994.2 at chr16:53141090-53321604
XR_001751993.1 at chr16:53141090-53324429
XM_024450461.1 at chr16:53156495-53327502
XM_024450460.1 at chr16:53157249-53327502
XM_005256176.3 at chr16:53208400-53327502

RefSeq Genes

CHD9 at chr16:53155926-53327502 - (NM_001308319) chromodomain-helicase-DNA-binding protein 9 isoform 1
CHD9 at chr16:53131012-53329150 - (NM_001352127) chromodomain-helicase-DNA-binding protein 9 isoform 2
CHD9 at chr16:53054991-53329150 - (NM_025134) chromodomain-helicase-DNA-binding protein 9 isoform 2
CHD9 at chr16:53207965-53329150 - (NM_001352156) chromodomain-helicase-DNA-binding protein 9 isoform 3
CHD9 at chr16:53207965-53329150 - (NM_001352157) chromodomain-helicase-DNA-binding protein 9 isoform 4
CHD9 at chr16:53208451-53329150 - (NM_001352158) chromodomain-helicase-DNA-binding protein 9 isoform 5

Non-Human RefSeq Genes

CHD9 at chr16:53054975-53327502 - (NM_001205650) chromodomain-helicase-DNA-binding protein 9
Chd9 at chr16:53055028-53327494 - (NM_177224) chromodomain-helicase-DNA-binding protein 9 isoform 2
Chd9 at chr16:53156024-53327494 - (NM_001310530) chromodomain-helicase-DNA-binding protein 9 isoform 1

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53207989-53326856

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53326856
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53207989-53326856

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53326856
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156543-53324895

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53156543-53324895
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156543-53324895

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53156543-53324895
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156543-53324895

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53156543-53324895
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156543-53324895

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53156543-53324895
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156543-53324895

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53327501
CHD9 at chr16:53055033-53329150
CHD9 at chr16:53055039-53121980
CHD9 at chr16:53099160-53222755
CHD9 at chr16:53099180-53122178
CHD9 at chr16:53130921-53327451
CHD9 at chr16:53131134-53156248
CHD9 at chr16:53156003-53327451
CHD9 at chr16:53156006-53157462
CHD9 at chr16:53156543-53324895
CHD9 at chr16:53157164-53250175
CHD9 at chr16:53207989-53268127
CHD9 at chr16:53208032-53209813
CHD9 at chr16:53208451-53222755
CHD9 at chr16:53209780-53226403
CHD9 at chr16:53235137-53248163
CHD9 at chr16:53235137-53327451
CHD9 at chr16:53245733-53250649
CHD9 at chr16:53249901-53254671
CHD9 at chr16:53314506-53321563
CHD9 at chr16:53314867-53324141

International Knockout Mouse Consortium Genes Mapped to Human Genome

Chd9_71764 at chr16:53055033-53327502
Chd9_93646 at chr16:53055033-53327502

Human Aligned mRNA Search Results

BC033770 - Homo sapiens chromodomain helicase DNA binding protein 9, mRNA (cDNA clone IMAGE:4338949), partial cds.
BC140815 - Homo sapiens chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:176492 IMAGE:9021683), complete cds.
BC144622 - Homo sapiens chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:178170 IMAGE:9053153), complete cds.

Non-Human Aligned mRNA Search Results

BC168553 - Xenopus tropicalis chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:184778 IMAGE:7648654), complete cds.
BC052896 - Mus musculus chromodomain helicase DNA binding protein 9, mRNA (cDNA clone IMAGE:30061058), partial cds.
BC145219 - Mus musculus chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:178778 IMAGE:9053770), complete cds.
CR848497 - Xenopus tropicalis finished cDNA, clone TEgg124c13.
JU330262 - TSA: Macaca mulatta Mamu_502977 mRNA sequence.