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UCSC Genes

CHD9 (uc002egy.3) at chr16:53088945-53361414 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc010cbw.3) at chr16:53301206-53361414 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc002ehg.2) at chr16:53272255-53361414 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc002ehf.3) at chr16:53269049-53361414 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc002ehe.1) at chr16:53269049-53282075 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc002ehd.2) at chr16:53241886-53307697 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc002ehc.3) at chr16:53189838-53361414 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc002ehb.3) at chr16:53189838-53361414 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
CHD9 (uc002egz.1) at chr16:53133072-53260424 - Homo sapiens chromodomain helicase DNA binding protein 9 (CHD9), mRNA.
PPARA (uc003bgx.1) at chr22:46546499-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 3, mRNA.
PPARA (uc003bgw.1) at chr22:46546499-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.
PPARA (uc010hab.1) at chr22:46546731-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.
PPARA (uc003bhb.1) at chr22:46572650-46639653 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.
PPARA (uc003bha.3) at chr22:46572650-46616543 - Homo sapiens peroxisome proliferator-activated receptor alpha (PPARA), transcript variant 5, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_025134.4 at chr16:53088945-53361414
NM_001308319.1 at chr16:53189838-53361414

RefSeq Genes

CHD9 at chr16:53189838-53361414 - (NM_001308319) chromodomain-helicase-DNA-binding protein 9 isoform 1
CHD9 at chr16:53164924-53363062 - (NM_001352127) chromodomain-helicase-DNA-binding protein 9 isoform 2
CHD9 at chr16:53088903-53363062 - (NM_025134) chromodomain-helicase-DNA-binding protein 9 isoform 2
CHD9 at chr16:53241877-53363062 - (NM_001352156) chromodomain-helicase-DNA-binding protein 9 isoform 3
CHD9 at chr16:53241877-53363062 - (NM_001352157) chromodomain-helicase-DNA-binding protein 9 isoform 4
CHD9 at chr16:53242363-53363062 - (NM_001352158) chromodomain-helicase-DNA-binding protein 9 isoform 5

Non-Human RefSeq Genes

CHD9 at chr16:53088923-53361414 - (NM_001205650) chromodomain-helicase-DNA-binding protein 9
Chd9 at chr16:53088918-53361406 - (NM_177224) chromodomain-helicase-DNA-binding protein 9 isoform 2
Chd9 at chr16:53189840-53361406 - (NM_001310530) chromodomain-helicase-DNA-binding protein 9 isoform 1

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53241901-53360768

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53088951-53155892
CHD9 at chr16:53133072-53256667
CHD9 at chr16:53133092-53156090
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53165046-53190160
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53189918-53191374
CHD9 at chr16:53191076-53284087
CHD9 at chr16:53241901-53360768
CHD9 at chr16:53241944-53243725
CHD9 at chr16:53242363-53256667
CHD9 at chr16:53243692-53260315
CHD9 at chr16:53269049-53282075
CHD9 at chr16:53269049-53361363
CHD9 at chr16:53279645-53284561
CHD9 at chr16:53283813-53288583
CHD9 at chr16:53348418-53355475
CHD9 at chr16:53348779-53358053

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53189915-53361363

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53088951-53155892
CHD9 at chr16:53133072-53256667
CHD9 at chr16:53133092-53156090
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53165046-53190160
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53189918-53191374
CHD9 at chr16:53191076-53284087
CHD9 at chr16:53241901-53302039
CHD9 at chr16:53241944-53243725
CHD9 at chr16:53242363-53256667
CHD9 at chr16:53243692-53260315
CHD9 at chr16:53269049-53282075
CHD9 at chr16:53269049-53361363
CHD9 at chr16:53279645-53284561
CHD9 at chr16:53283813-53288583
CHD9 at chr16:53348418-53355475
CHD9 at chr16:53348779-53358053

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53189915-53361363

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53088951-53155892
CHD9 at chr16:53133072-53256667
CHD9 at chr16:53133092-53156090
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53165046-53190160
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53189918-53191374
CHD9 at chr16:53191076-53284087
CHD9 at chr16:53241901-53302039
CHD9 at chr16:53241944-53243725
CHD9 at chr16:53242363-53256667
CHD9 at chr16:53243692-53260315
CHD9 at chr16:53269049-53282075
CHD9 at chr16:53269049-53361363
CHD9 at chr16:53279645-53284561
CHD9 at chr16:53283813-53288583
CHD9 at chr16:53348418-53355475
CHD9 at chr16:53348779-53358053

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53190455-53358807

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53088951-53155892
CHD9 at chr16:53133072-53256667
CHD9 at chr16:53133092-53156090
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53165046-53190160
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53189918-53191374
CHD9 at chr16:53190455-53358807
CHD9 at chr16:53191076-53284087
CHD9 at chr16:53241901-53302039
CHD9 at chr16:53241944-53243725
CHD9 at chr16:53242363-53256667
CHD9 at chr16:53243692-53260315
CHD9 at chr16:53269049-53282075
CHD9 at chr16:53269049-53361363
CHD9 at chr16:53279645-53284561
CHD9 at chr16:53283813-53288583
CHD9 at chr16:53348418-53355475
CHD9 at chr16:53348779-53358053

Basic Gene Annotation Set from GENCODE Version 19

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53133092-53156086
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53189915-53361363

Comprehensive Gene Annotation Set from GENCODE Version 19

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53088951-53155892
CHD9 at chr16:53133072-53256667
CHD9 at chr16:53133092-53156086
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53165046-53190160
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53189918-53191374
CHD9 at chr16:53191076-53284087
CHD9 at chr16:53241901-53302039
CHD9 at chr16:53241944-53243725
CHD9 at chr16:53242363-53256667
CHD9 at chr16:53243692-53260315
CHD9 at chr16:53269049-53282075
CHD9 at chr16:53269049-53361363
CHD9 at chr16:53279645-53284561
CHD9 at chr16:53283813-53288583
CHD9 at chr16:53348418-53355475
CHD9 at chr16:53348779-53358053

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53133092-53156086
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53189915-53361363

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53088951-53155892
CHD9 at chr16:53133072-53256667
CHD9 at chr16:53133092-53156086
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53165046-53190160
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53189918-53191374
CHD9 at chr16:53191076-53284087
CHD9 at chr16:53241901-53302039
CHD9 at chr16:53241944-53243725
CHD9 at chr16:53242363-53256667
CHD9 at chr16:53243692-53260315
CHD9 at chr16:53269049-53282075
CHD9 at chr16:53269049-53361363
CHD9 at chr16:53279645-53284561
CHD9 at chr16:53283813-53288583
CHD9 at chr16:53348418-53355475
CHD9 at chr16:53348779-53358053

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53133092-53156086
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53189915-53361363

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53363062
CHD9 at chr16:53088951-53155892
CHD9 at chr16:53133072-53256667
CHD9 at chr16:53133092-53156086
CHD9 at chr16:53164833-53361363
CHD9 at chr16:53165046-53190160
CHD9 at chr16:53189915-53361363
CHD9 at chr16:53189918-53191374
CHD9 at chr16:53191076-53284087
CHD9 at chr16:53241901-53302039
CHD9 at chr16:53241944-53243725
CHD9 at chr16:53242363-53256667
CHD9 at chr16:53243692-53260315
CHD9 at chr16:53269049-53282075
CHD9 at chr16:53269049-53361363
CHD9 at chr16:53279645-53284561
CHD9 at chr16:53283813-53288583
CHD9 at chr16:53348418-53355475
CHD9 at chr16:53348779-53358053

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53190455-53358807
CHD9 at chr16:53242230-53361413

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CHD9 at chr16:53088945-53361413
CHD9 at chr16:53088945-53361413
CHD9 at chr16:53190455-53358807
CHD9 at chr16:53242230-53361413

International Knockout Mouse Consortium Genes Mapped to Human Genome

Chd9_71764 at chr16:53088945-53361414
Chd9_93646 at chr16:53088945-53361414

Human Aligned mRNA Search Results

BC033770 - Homo sapiens chromodomain helicase DNA binding protein 9, mRNA (cDNA clone IMAGE:4338949), partial cds.
BC140815 - Homo sapiens chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:176492 IMAGE:9021683), complete cds.
BC144622 - Homo sapiens chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:178170 IMAGE:9053153), complete cds.

Non-Human Aligned mRNA Search Results

BC168553 - Xenopus tropicalis chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:184778 IMAGE:7648654), complete cds.
BC052896 - Mus musculus chromodomain helicase DNA binding protein 9, mRNA (cDNA clone IMAGE:30061058), partial cds.
BC145219 - Mus musculus chromodomain helicase DNA binding protein 9, mRNA (cDNA clone MGC:178778 IMAGE:9053770), complete cds.
CR848497 - Xenopus tropicalis finished cDNA, clone TEgg124c13.
JU330262 - TSA: Macaca mulatta Mamu_502977 mRNA sequence.

Ensembl Genes

CHD9 at chr16:53348418-53355475 - (ENST00000564600)
CHD9 at chr16:53279645-53284561 - (ENST00000565119)
CHD9 at chr16:53269049-53361363 - (ENST00000219084)
CHD9 at chr16:53242363-53256667 - (ENST00000565442)
CHD9 at chr16:53241901-53302039 - (ENST00000565803)
CHD9 at chr16:53189918-53191374 - (ENST00000562785)
CHD9 at chr16:53165046-53190160 - (ENST00000563410)
CHD9 at chr16:53133092-53156086 - (ENST00000564582)
CHD9 at chr16:53088951-53155892 - (ENST00000561869)
CHD9 at chr16:53088945-53361413 - (ENST00000447540)
CHD9 at chr16:53088945-53363062 - (ENST00000566029)
CHD9 at chr16:53133072-53256667 - (ENST00000565832)
CHD9 at chr16:53164833-53361363 - (ENST00000564845)
CHD9 at chr16:53189915-53361363 - (ENST00000398510)
CHD9 at chr16:53191076-53284087 - (ENST00000564255)
CHD9 at chr16:53241944-53243725 - (ENST00000569794)
CHD9 at chr16:53243692-53260315 - (ENST00000562791)
CHD9 at chr16:53269049-53282075 - (ENST00000569225)
CHD9 at chr16:53283813-53288583 - (ENST00000562806)
CHD9 at chr16:53348779-53358053 - (ENST00000564641)