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UCSC Genes

CHD3 (uc002gjd.2) at chr17:7788123-7816075 - Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 3, mRNA.
CHD3 (uc002gjj.2) at chr17:7812819-7816075 - Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 2, mRNA.
CHD3 (uc002gjh.2) at chr17:7807143-7816075 - Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 1, mRNA.
CHD3 (uc002gjg.1) at chr17:7794258-7801420 - Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 2, mRNA.
CHD3 (uc002gjf.2) at chr17:7792169-7816075 - Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 2, mRNA.
CHD3 (uc002gje.2) at chr17:7792169-7816075 - Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 1, mRNA.
HABP4 (uc010msg.3) at chr9:99212414-99253618 - Homo sapiens hyaluronan binding protein 4 (HABP4), mRNA.
SERBP1 (uc001ddv.3) at chr1:67873493-67896123 - Homo sapiens SERPINE1 mRNA binding protein 1 (SERBP1), transcript variant 1, mRNA.
PRPF40A (uc002tyi.2) at chr2:153528973-153573921 - Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) (PRPF40A), mRNA.
GIT1 (uc002hef.2) at chr17:27900487-27916610 - Homo sapiens G protein-coupled receptor kinase interacting ArfGAP 1 (GIT1), transcript variant 2, mRNA.
TRIM28 (uc002qtg.1) at chr19:59055836-59062082 - Homo sapiens tripartite motif containing 28 (TRIM28), mRNA.
TRIM28 (uc002qth.1) at chr19:59059661-59062082 - Homo sapiens tripartite motif containing 28 (TRIM28), mRNA.
PCNT (uc002zji.4) at chr21:47744036-47865682 - Homo sapiens pericentrin (PCNT), mRNA.
DDX5 (uc002jej.2) at chr17:62494374-62502484 - Homo sapiens DEAD (Asp-Glu-Ala-Asp) box helicase 5 (DDX5), mRNA.
HDAC2 (uc003pwd.2) at chr6:114257320-114292359 - Homo sapiens histone deacetylase 2 (HDAC2), transcript variant 1, mRNA.
HDAC2 (uc003pwe.2) at chr6:114257320-114292359 - Homo sapiens histone deacetylase 2 (HDAC2), transcript variant 2, non-coding RNA.
HDAC2 (uc003pwc.2) at chr6:114257320-114291888 - Homo sapiens histone deacetylase 2 (HDAC2), transcript variant 3, non-coding RNA.
SUMO1 (uc002uyz.1) at chr2:203070903-203103322 - Homo sapiens small ubiquitin-like modifier 1 (SUMO1), transcript variant 1, mRNA.
RBBP7 (uc004cxt.3) at chrX:16862775-16888534 - Homo sapiens retinoblastoma binding protein 7 (RBBP7), transcript variant 2, mRNA.
BARD1 (uc002veu.2) at chr2:215593275-215674428 - Homo sapiens BRCA1 associated RING domain 1 (BARD1), mRNA.
IKZF1 (uc003tow.4) at chr7:50344378-50472798 - Homo sapiens IKAROS family zinc finger 1 (Ikaros) (IKZF1), transcript variant 1, mRNA.
IKZF1 (uc022acz.1) at chr7:50344378-50472798 - Homo sapiens IKAROS family zinc finger 1 (Ikaros) (IKZF1), transcript variant 10, mRNA.
IKZF1 (uc022acy.1) at chr7:50344378-50472798 - Homo sapiens IKAROS family zinc finger 1 (Ikaros) (IKZF1), transcript variant 11, mRNA.
IKZF1 (uc003toz.4) at chr7:50367221-50472798 - Homo sapiens IKAROS family zinc finger 1 (Ikaros) (IKZF1), transcript variant 1, mRNA.
RBBP4 (uc001bvr.3) at chr1:33116749-33151812 - Homo sapiens retinoblastoma binding protein 4 (RBBP4), transcript variant 1, mRNA.
RBBP4 (uc010ohk.2) at chr1:33116959-33151812 - Homo sapiens retinoblastoma binding protein 4 (RBBP4), transcript variant 3, mRNA.
HTT (uc021xkv.1) at chr4:3076408-3245687 - Homo sapiens huntingtin (HTT), mRNA.
HDAC1 (uc001bvb.1) at chr1:32757708-32799224 - Homo sapiens histone deacetylase 1 (HDAC1), mRNA.
HDAC1 (uc010ohf.1) at chr1:32757993-32799224 - Homo sapiens histone deacetylase 1 (HDAC1), mRNA.
DDX5 (uc002jek.2) at chr17:62494374-62502484 - Homo sapiens DEAD (Asp-Glu-Ala-Asp) box helicase 5 (DDX5), mRNA.
KDM1A (uc001bgi.2) at chr1:23345941-23410184 - Homo sapiens lysine (K)-specific demethylase 1A (KDM1A), transcript variant 2, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001005271.2 at chr17:7788123-7816075
NM_005852.3 at chr17:7792169-7816075
NM_001005273.2 at chr17:7792169-7816075

RefSeq Genes

CHD3 at chr17:7788114-7816073 - (NM_001005271) chromodomain-helicase-DNA-binding protein 3 isoform 3
CHD3 at chr17:7792107-7816073 - (NM_001005273) chromodomain-helicase-DNA-binding protein 3 isoform 1
CHD3 at chr17:7792107-7816073 - (NM_005852) chromodomain-helicase-DNA-binding protein 3 isoform 2

Non-Human RefSeq Genes

Chd3 at chr17:7788112-7816074 - (NM_146019) chromodomain-helicase-DNA-binding protein 3
Chd3 at chr1:6186669-6206790 - (NM_140854) Chd3

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008
CHD3 at chr17:7793742-7793923
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7796604-7798109
CHD3 at chr17:7797147-7797822
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7810757-7811888
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811229-7814213
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008
CHD3 at chr17:7793742-7793923
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7796604-7798109
CHD3 at chr17:7797147-7797822
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7810757-7811888
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811229-7814213
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008
CHD3 at chr17:7793742-7793923
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7796604-7798109
CHD3 at chr17:7797147-7797822
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7810757-7811888
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811229-7814213
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008
CHD3 at chr17:7793742-7793923
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7796604-7798109
CHD3 at chr17:7797147-7797822
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7810757-7811888
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811229-7814213
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

Basic Gene Annotation Set from GENCODE Version 19

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008

Comprehensive Gene Annotation Set from GENCODE Version 19

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008
CHD3 at chr17:7793742-7793923
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7796604-7798109
CHD3 at chr17:7797147-7797822
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7810757-7811888
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811229-7814213
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008
CHD3 at chr17:7793742-7793923
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7796604-7798109
CHD3 at chr17:7797147-7797822
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7810757-7811888
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811229-7814213
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7793036-7794008
CHD3 at chr17:7793742-7793923
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7796604-7798109
CHD3 at chr17:7797147-7797822
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7810757-7811888
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811229-7814213
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7804172-7815312
CHD3 at chr17:7807166-7816078

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CHD3 at chr17:7788124-7816078
CHD3 at chr17:7792109-7816078
CHD3 at chr17:7792169-7816078
CHD3 at chr17:7794053-7801331
CHD3 at chr17:7797872-7798886
CHD3 at chr17:7804172-7815312
CHD3 at chr17:7807166-7816078
CHD3 at chr17:7807392-7808974
CHD3 at chr17:7807553-7808594
CHD3 at chr17:7811014-7815133
CHD3 at chr17:7811310-7815068
CHD3 at chr17:7812819-7816078

International Knockout Mouse Consortium Genes Mapped to Human Genome

Chd3_29088 at chr17:7788123-7816075
Chd3_29089 at chr17:7788123-7816075
Chd3_29090 at chr17:7788123-7816075
Chd3_29091 at chr17:7788123-7816075
Chd3_75344 at chr17:7788123-7816075

Human Aligned mRNA Search Results

BC110648 - Homo sapiens chromodomain helicase DNA binding protein 3, mRNA (cDNA clone IMAGE:4536556), partial cds.
AF006515 - Homo sapiens CHD3 mRNA, complete cds.

Non-Human Aligned mRNA Search Results

BC030435 - Mus musculus chromodomain helicase DNA binding protein 3, mRNA (cDNA clone IMAGE:5369285), complete cds.
BC055484 - Mus musculus chromodomain helicase DNA binding protein 3, mRNA (cDNA clone IMAGE:4459032), complete cds.
BC120420 - Bos taurus chromodomain helicase DNA binding protein 3, mRNA (cDNA clone IMAGE:8237502), partial cds.
EU780792 - Sus scrofa CHD3-like protein mRNA, partial cds.
AF007780 - Drosophila melanogaster CHD3 mRNA, partial cds.
BT150049 - Drosophila melanogaster FI21135 full insert cDNA.
AY071503 - Drosophila melanogaster RE55932 full length cDNA.
AY903245 - Rattus norvegicus strain WHD chromodomain helicase DNA-binding protein 3 short isoform (Chd3) mRNA, partial cds.
AY903246 - Rattus norvegicus strain SHR/OlaIpcv chromodomain helicase DNA-binding protein 3 short isoform (Chd3) mRNA, partial cds.
AY903247 - Rattus norvegicus strain SHRSP chromodomain helicase DNA-binding protein 3 short isoform (Chd3) mRNA, partial cds.
AY903248 - Rattus norvegicus strain WKY chromodomain helicase DNA-binding protein 3 short isoform (Chd3) mRNA, partial cds.
AY903249 - Rattus norvegicus strain WHD chromodomain helicase DNA-binding protein 3 long isoform (Chd3) mRNA, partial cds.
AY903250 - Rattus norvegicus strain SHR/OlaIpcv chromodomain helicase DNA-binding protein 3 long isoform (Chd3) mRNA, partial cds.
AY903251 - Rattus norvegicus strain SHRSP chromodomain helicase DNA-binding protein 3 long isoform (Chd3) mRNA, partial cds.
AY903252 - Rattus norvegicus strain WKY chromodomain helicase DNA-binding protein 3 long isoform (Chd3) mRNA, partial cds.
JU327393 - TSA: Macaca mulatta Mamu_502927 mRNA sequence.
JU474122 - TSA: Macaca mulatta Mamu_365589 mRNA sequence.
BC127574 - Danio rerio similar to CHD3, mRNA (cDNA clone IMAGE:6799688), partial cds.
BC127572 - Danio rerio similar to CHD3, mRNA (cDNA clone IMAGE:6797589), partial cds.

Ensembl Genes

CHCHD3 at chr7:132658359-132766800 - (ENST00000542753)
CHCHD3 at chr7:132522361-132766817 - (ENST00000466644)
CHCHD3 at chr7:132470271-132736822 - (ENST00000496427)
CHCHD3 at chr7:132469644-132766814 - (ENST00000448878)
PTCHD3P3 at chr6:109609774-109611706 - (ENST00000403073)
CHD3 at chr17:7812819-7816078 - (ENST00000481999)
CHD3 at chr17:7811229-7814213 - (ENST00000573936)
CHD3 at chr17:7810757-7811888 - (ENST00000572750)
CHD3 at chr17:7807392-7808974 - (ENST00000466233)
CHD3 at chr17:7797872-7798886 - (ENST00000479080)
CHD3 at chr17:7796604-7798109 - (ENST00000572579)
CHD3 at chr17:7793742-7793923 - (ENST00000574022)
CHD3 at chr17:7792169-7816078 - (ENST00000330494)
CHD3 at chr17:7788124-7816078 - (ENST00000380358)
PTCHD3P1 at chr10:29699172-29758051 - (ENST00000455774)
PTCHD3P1 at chr10:29698520-29756207 - (ENST00000445521)
PTCHD3P1 at chr10:29698509-29772361 - (ENST00000446807)
PTCHD3P1 at chr10:29698487-29772847 - (ENST00000414457)
PTCHD3P1 at chr10:29698486-29709679 - (ENST00000609413)
PTCHD3P1 at chr10:29698468-29776674 - (ENST00000413405)
PTCHD3 at chr10:27687116-27703297 - (ENST00000438700)
CHCHD3P3 at chr1:27527325-27527964 - (ENST00000446783)
CHCHD3P1 at chr10:8661896-8662571 - (ENST00000425516)
PTCHD3P1 at chr10:29698331-29747329 - (ENST00000430295)
PTCHD3P1 at chr10:29698486-29711238 - (ENST00000537908)
PTCHD3P1 at chr10:29698486-29709453 - (ENST00000608994)
PTCHD3P1 at chr10:29698501-29711301 - (ENST00000427063)
PTCHD3P1 at chr10:29698515-29772114 - (ENST00000423223)
PTCHD3P1 at chr10:29698531-29747716 - (ENST00000438202)
CHCHD3P2 at chr12:73004458-73005096 - (ENST00000550751)
CHD3 at chr17:7792109-7816078 - (ENST00000358181)
CHD3 at chr17:7793036-7794008 - (ENST00000570758)
CHD3 at chr17:7794053-7801331 - (ENST00000452447)
CHD3 at chr17:7797147-7797822 - (ENST00000571249)
CHD3 at chr17:7807166-7816078 - (ENST00000470531)
CHD3 at chr17:7807553-7808594 - (ENST00000473376)
CHD3 at chr17:7811014-7815133 - (ENST00000439235)
CHD3 at chr17:7811310-7815068 - (ENST00000449744)
PTCHD3P2 at chr2:170623695-170625309 - (ENST00000424937)
CHCHD3 at chr7:132469629-132766842 - (ENST00000262570)
CHCHD3 at chr7:132469666-132766828 - (ENST00000476546)
CHCHD3 at chr7:132470286-132766830 - (ENST00000423635)
CHCHD3 at chr7:132658188-132754994 - (ENST00000481152)
CHCHD3 at chr7:132720509-132766848 - (ENST00000457942)

Vega Protein-Coding Annotations

OTTHUMT00000318052 at chr17:7788124-7816078
OTTHUMT00000318051 at chr17:7792109-7816078
OTTHUMT00000318050 at chr17:7792169-7816078
OTTHUMT00000318055 at chr17:7794053-7801331
OTTHUMT00000318056 at chr17:7797872-7798886
OTTHUMT00000318053 at chr17:7807166-7816078
OTTHUMT00000318057 at chr17:7807392-7808974
OTTHUMT00000318058 at chr17:7807553-7808594
OTTHUMT00000318059 at chr17:7811014-7815133
OTTHUMT00000318060 at chr17:7811310-7815068
OTTHUMT00000318054 at chr17:7812819-7816078