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UCSC Genes

CCR9 (uc003coz.2) at chr3:45927996-45944667 - Homo sapiens chemokine (C-C motif) receptor 9 (CCR9), transcript variant A, mRNA.
CCR9 (uc021wwv.1) at chr3:45942317-45943390 - Homo sapiens chemokine (C-C motif) receptor 9 (CCR9), transcript variant B, mRNA.
CCR9 (uc010hiv.2) at chr3:45927996-45944667 - Homo sapiens chemokine (C-C motif) receptor 9 (CCR9), transcript variant C, mRNA.
CCR9 (uc003cpa.2) at chr3:45927996-45944667 - Homo sapiens chemokine (C-C motif) receptor 9 (CCR9), transcript variant B, mRNA.
CCL25 (uc002mjc.4) at chr19:8117646-8127547 - Homo sapiens chemokine (C-C motif) ligand 25 (CCL25), transcript variant 2, mRNA.
CCL25 (uc002mjd.3) at chr19:8117646-8127547 - Homo sapiens chemokine (C-C motif) ligand 25 (CCL25), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_006641.3 at chr3:45927996-45944667
NM_031200.2 at chr3:45927996-45944667
NM_001256369.1 at chr3:45927996-45944667

RefSeq Genes

CCR9 at chr3:45927996-45944667 - (NM_001256369) C-C chemokine receptor type 9 isoform B
CCR9 at chr3:45928035-45944666 - (NM_006641) C-C chemokine receptor type 9 isoform B
CCR9 at chr3:45928035-45944666 - (NM_031200) C-C chemokine receptor type 9 isoform A

Non-Human RefSeq Genes

CCR9 at chr3:45942311-45943468 - (NM_001001624) C-C chemokine receptor type 9
CCR9 at chr3:45942302-45943390 - (NM_001285292) C-C chemokine receptor type 9
CCR9 at chr3:45942369-45943406 - (NM_001284476) C-C chemokine receptor type 9
CCR9 at chr3:45928021-45944472 - (NM_001098068) C-C chemokine receptor type 9
Ccr9 at chr3:45942296-45943546 - (NM_009913) C-C chemokine receptor type 9
Ccr9 at chr3:45942296-45943546 - (NM_001166625) C-C chemokine receptor type 9
Ccr9 at chr3:45936416-45943407 - (NM_172329) C-C chemokine receptor type 9
CCR9 at chr3:45942367-45943393 - (NM_001040286) C-C chemokine receptor type 9

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928035-45944666
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928035-45944666
CCR9 at chr3:45928041-45943390

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45927996-45944669
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45927996-45944669
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928041-45943390

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45927996-45944669
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45927996-45944669
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928041-45943390

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45927996-45944669
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45927996-45944669
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928041-45943390

Basic Gene Annotation Set from GENCODE Version 19

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from GENCODE Version 19

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CCR9 at chr3:45927996-45944667
CCR9 at chr3:45928001-45944666
CCR9 at chr3:45928002-45936600
CCR9 at chr3:45928041-45943390
CCR9 at chr3:45928041-45943390

International Knockout Mouse Consortium Genes Mapped to Human Genome

Ccr9_43833 at chr3:45927996-45944667
Ccr9_76629 at chr3:45927996-45944667
Ccr9_82869 at chr3:45927996-45944667
Ccr9_93001 at chr3:45927996-45944667

Human Aligned mRNA Search Results

AJ132337 - Homo sapiens mRNA for chemokine receptor CCR9.
AF145207 - Homo sapiens CCR9 chemokine receptor (CCR9) mRNA, partial cds.
BC095516 - Homo sapiens chemokine (C-C motif) receptor 9, mRNA (cDNA clone IMAGE:6971963), partial cds.
AF145439 - Homo sapiens CC chemokine receptor 9A (CCR9) mRNA, alternatively spliced, complete cds.
AF145440 - Homo sapiens CC chemokine receptor 9B (CCR9) mRNA, alternatively spliced, complete cds.
BC069678 - Homo sapiens chemokine (C-C motif) receptor 9, mRNA (cDNA clone MGC:97366 IMAGE:7262627), complete cds.
AK313366 - Homo sapiens cDNA, FLJ93894, highly similar to Homo sapiens chemokine (C-C motif) receptor 9 (CCR9), transcript variant A, mRNA.
AK312824 - Homo sapiens cDNA, FLJ93261, highly similar to Homo sapiens chemokine (C-C motif) receptor 9 (CCR9), transcript variant B, mRNA.

Non-Human Aligned mRNA Search Results

KY471554 - Epinephelus coioides CCR9b mRNA, complete cds.
KY471553 - Epinephelus coioides CCR9a mRNA, complete cds.
AF458780 - Rattus norvegicus chemokine receptor CCR9 (Ccr9) mRNA, complete cds.
AJ132336 - Mus musculus mRNA for chemokine receptor CCR9.
AJ131357 - Mus musculus mRNA for chemokine receptor (CCR9 gene).
BC134462 - Bos taurus chemokine (C-C motif) receptor 9, mRNA (cDNA clone MGC:140454 IMAGE:8182525), complete cds.
MF783174 - Ctenopharyngodon idella C-C motif chemokine receptor 9b (CCR9b) mRNA, complete cds.
BC091115 - Rattus norvegicus chemokine (C-C motif) receptor 9, mRNA (cDNA clone MGC:108562 IMAGE:7381553), complete cds.
BC132166 - Mus musculus chemokine (C-C motif) receptor 9, mRNA (cDNA clone MGC:163797 IMAGE:40130443), complete cds.
BC132466 - Mus musculus chemokine (C-C motif) receptor 9, mRNA (cDNA clone MGC:164097 IMAGE:40130743), complete cds.
AB622806 - Canis lupus familiaris ccr9 mRNA for chemokine C-C motif receptor 9, complete cds.
FN665390 - Dicentrarchus labrax mRNA for C-C chemokine receptor type 9 (ccr9 gene).
AB119263 - Sus scrofa CCR9 mRNA for chemokine C-C motif receptor 9, complete cds.
DQ131911 - Ovis aries chemokine C-C motif receptor 9 (CCR9) mRNA, complete cds.
EU348828 - Oryctolagus cuniculus chemokine (C-C motif) receptor 9 (CCR9) mRNA, partial cds.
EU684267 - Bos taurus CC chemokine receptor 9 (CCR9) mRNA, partial cds.
EU836007 - Mustela putorius furo chemokine (C-C motif) receptor 9 (CCR9) mRNA, partial cds.
BT026294 - Bos taurus chemokine (C-C motif) receptor 9 (CCR9), NotI truncated, mRNA, incomplete 3' cds.
JU472440 - TSA: Macaca mulatta Mamu_376555 mRNA sequence.
JF913466 - Scophthalmus maximus CC chemokine receptor 9 (CCR9) mRNA, complete cds.

Ensembl Genes

CCR9 at chr3:45928041-45943390 - (ENST00000355983)
CCR9 at chr3:45928001-45944666 - (ENST00000395963)
CCR9 at chr3:45927996-45944667 - (ENST00000357632)
CCR9 at chr3:45928002-45936600 - (ENST00000463197)
CCR9 at chr3:45928041-45943390 - (ENST00000422395)

Vega Protein-Coding Annotations

OTTHUMT00000257323 at chr3:45927996-45944667
OTTHUMT00000257324 at chr3:45928001-45944666
OTTHUMT00000344608 at chr3:45928002-45936600
OTTHUMT00000344397 at chr3:45928041-45943390