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UCSC Genes

CASP4 (uc001pid.1) at chr11:104813594-104839325 - Homo sapiens caspase 4, apoptosis-related cysteine peptidase (CASP4), transcript variant alpha, mRNA.
CASP4 (uc010ruy.1) at chr11:104822124-104839325 - Homo sapiens caspase 4, apoptosis-related cysteine peptidase (CASP4), transcript variant alpha, mRNA.
CASP4 (uc010rux.1) at chr11:104819547-104839325 - Homo sapiens caspase 4, apoptosis-related cysteine peptidase (CASP4), transcript variant alpha, mRNA.
CASP4 (uc009yxg.1) at chr11:104815475-104839325 - Homo sapiens caspase 4, apoptosis-related cysteine peptidase (CASP4), transcript variant alpha, mRNA.
CASP4 (uc001pib.1) at chr11:104813594-104827422 - Homo sapiens caspase 4, apoptosis-related cysteine peptidase (CASP4), transcript variant gamma, mRNA.
HIGD1A (uc003cmb.4) at chr3:42824400-42846027 - Homo sapiens HIG1 hypoxia inducible domain family, member 1A (HIGD1A), transcript variant 3, mRNA.
HIGD1A (uc003cma.4) at chr3:42824400-42846027 - Homo sapiens HIG1 hypoxia inducible domain family, member 1A (HIGD1A), transcript variant 2, mRNA.
TSHZ3 (uc002nsy.4) at chr19:31765851-31840190 - Homo sapiens teashirt zinc finger homeobox 3 (TSHZ3), mRNA.
UFL1 (uc003por.3) at chr6:96969702-97003151 - Homo sapiens UFM1-specific ligase 1 (UFL1), mRNA.
CARD16 (uc001pip.1) at chr11:104912053-104916051 - Homo sapiens caspase recruitment domain family, member 16 (CARD16), transcript variant 1, mRNA.
MTHFD1L (uc003qob.3) at chr6:151186815-151423023 - Homo sapiens methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA.
APBB1 (uc031pyt.1) at chr11:6416355-6425894 - Homo sapiens amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (APBB1), transcript variant 7, mRNA.
APBB1 (uc010rag.2) at chr11:6416355-6426891 - Homo sapiens amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (APBB1), transcript variant 4, mRNA.
APBB1 (uc009yfb.3) at chr11:6416355-6426891 - Homo sapiens amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (APBB1), transcript variant 5, mRNA.
APBB1 (uc001mde.3) at chr11:6416355-6426891 - Homo sapiens amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (APBB1), transcript variant 6, mRNA.
APBB1 (uc001mdb.2) at chr11:6416355-6440332 - Homo sapiens amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (APBB1), transcript variant 1, mRNA.
CASP8 (uc002uxr.1) at chr2:202098166-202152434 - Homo sapiens caspase 8, apoptosis-related cysteine peptidase (CASP8), transcript variant B, mRNA.
CASP8 (uc021vuz.1) at chr2:202131210-202146638 - Homo sapiens caspase 8, apoptosis-related cysteine peptidase (CASP8), transcript variant E, mRNA.
DDIT3 (uc021qzj.1) at chr12:57910371-57914300 - Homo sapiens DNA-damage-inducible transcript 3 (DDIT3), transcript variant 6, mRNA.
DDIT3 (uc001soi.3) at chr12:57910371-57914300 - Homo sapiens DNA-damage-inducible transcript 3 (DDIT3), transcript variant 5, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_033306.2 at chr11:104813594-104839259
NM_001225.3 at chr11:104813594-104839325

RefSeq Genes

CASP4 at chr11:104813593-104839301 - (NM_033306) caspase-4 isoform gamma precursor
CASP4 at chr11:104813593-104839301 - (NM_001225) caspase-4 isoform alpha precursor

Non-Human RefSeq Genes

CASP4 at chr11:104813599-104825729 - (NM_001260956) caspase-4
Casp4 at chr11:104815476-104825729 - (NM_053736) caspase 4
CASP4 at chr11:104813590-104825719 - (NM_176638) caspase-4
CASP4 at chr11:104757441-104915386 - (NM_001009365) caspase-1
CASP4 at chr11:104815480-104971508 - (NM_001003125) caspase-1
CASP4 at chr11:104813521-104951166 - (NM_001309343) caspase 4, apoptosis-related cysteine peptidase
Casp4 at chr11:104866467-104872888 - (NM_007609) caspase-4 precursor
Casp4 at chr11:104815476-104825711 - (NM_007609) caspase-4 precursor

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CASP4 at chr11:104813593-104839301
CASP4 at chr11:104813595-104827425

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104839301
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813595-104827425

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

Basic Gene Annotation Set from GENCODE Version 19

CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104820388-104839366

Comprehensive Gene Annotation Set from GENCODE Version 19

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104820388-104839366

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104820388-104839366

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104820388-104839366

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CASP4 at chr11:104813593-104819621
CASP4 at chr11:104813593-104840163
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813595-104827425
CASP4 at chr11:104813596-104817919
CASP4 at chr11:104813597-104821719
CASP4 at chr11:104813600-104818085
CASP4 at chr11:104815480-104839274
CASP4 at chr11:104817351-104819461
CASP4 at chr11:104819329-104839292
CASP4 at chr11:104820129-104839308
CASP4 at chr11:104820388-104839366
CASP4 at chr11:104821755-104840093
CASP4 at chr11:104822124-104839302

International Knockout Mouse Consortium Genes Mapped to Human Genome

Casp4_47499 at chr11:104813594-104839325
Casp4_75743 at chr11:104813594-104839325

BC017839 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1273  100.0%         11     - 104813604 104839289  BC017839     3  1275  1306

Non-Human Aligned mRNA Search Results

BC112708 - Bos taurus caspase 4, apoptosis-related cysteine peptidase, mRNA (cDNA clone MGC:137679 IMAGE:8170234), complete cds.
BT020999 - Bos taurus caspase 4, apoptosis-related cysteine protease (CASP4), mRNA, complete cds.
JU473387 - TSA: Macaca mulatta Mamu_387057 mRNA sequence.
EU836041 - Mustela putorius furo caspase 4 (Casp4) mRNA, partial cds.
BC061255 - Mus musculus caspase 4, apoptosis-related cysteine peptidase, mRNA (cDNA clone MGC:74411 IMAGE:30251263), complete cds.
BC104720 - Rattus norvegicus caspase 4, apoptosis-related cysteine peptidase, mRNA (cDNA clone MGC:124949 IMAGE:7382967), complete cds.

Ensembl Genes

CASP4 at chr11:104821755-104840093 - (ENST00000417440)
CASP4 at chr11:104820129-104839308 - (ENST00000524843)
CASP4 at chr11:104817351-104819461 - (ENST00000534356)
CASP4 at chr11:104813600-104818085 - (ENST00000530309)
CASP4 at chr11:104813596-104817919 - (ENST00000533252)
CASP4 at chr11:104813593-104819621 - (ENST00000525116)
CASP4 at chr11:104813593-104840163 - (ENST00000444739)
CASP4 at chr11:104813595-104827425 - (ENST00000393150)
CASP4 at chr11:104813597-104821719 - (ENST00000529565)
CASP4 at chr11:104815480-104839274 - (ENST00000533730)
CASP4 at chr11:104819329-104839292 - (ENST00000529183)
CASP4 at chr11:104820388-104839366 - (ENST00000531333)
CASP4 at chr11:104822124-104839302 - (ENST00000531546)