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UCSC Genes

CALY (uc001lmo.2) at chr10:135138928-135150475 - Homo sapiens calcyon neuron-specific vesicular protein (CALY), mRNA.
CLTA (uc003zzc.3) at chr9:36190853-36212059 - Homo sapiens clathrin, light chain A (CLTA), transcript variant 2, mRNA.
CYLC2 (uc004bbs.2) at chr9:105757593-105780770 - Homo sapiens cylicin, basic protein of sperm head cytoskeleton 2 (CYLC2), mRNA.
CYLC1 (uc031tka.1) at chrX:83116134-83141708 - Homo sapiens cylicin, basic protein of sperm head cytoskeleton 1 (CYLC1), transcript variant 2, mRNA.
LCN10 (uc004civ.3) at chr9:139632619-139637414 - Homo sapiens lipocalin 10 (LCN10), mRNA.
ACTRT1 (uc004eum.3) at chrX:127184941-127186382 - Homo sapiens actin-related protein T1 (ACTRT1), mRNA.
LCN12 (uc022bpx.1) at chr9:139844003-139847830 - Homo sapiens lipocalin 12 (LCN12), mRNA.
LCN8 (uc004cjb.1) at chr9:139648840-139652731 - Homo sapiens lipocalin 8 (LCN8), mRNA.
LCN12 (uc004ckb.3) at chr9:139846772-139849949 - Homo sapiens lipocalin 12 (LCN12), mRNA.
LCN8 (uc004cjc.1) at chr9:139650160-139652731 - Homo sapiens lipocalin 8 (LCN8), mRNA.
LCN9 (uc004cgk.2) at chr9:138555168-138557754 - Homo sapiens lipocalin 9 (LCN9), mRNA.
CYLC1 (uc004eei.2) at chrX:83116134-83141708 - Homo sapiens cylicin, basic protein of sperm head cytoskeleton 1 (CYLC1), transcript variant 1, mRNA.
LCN9 (uc031tfr.1) at chr9:138555168-138557949 - Homo sapiens lipocalin 9 (LCN9), mRNA.
CYLC1 (uc004eeh.2) at chrX:83116134-83129639 - Homo sapiens cylicin, basic protein of sperm head cytoskeleton 1 (CYLC1), transcript variant 1, mRNA.
CCIN (uc003zzb.4) at chr9:36169389-36171331 - Homo sapiens calicin (CCIN), mRNA.
ACTRT2 (uc001ajz.3) at chr1:2938046-2939467 - Homo sapiens actin-related protein T2 (ACTRT2), mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001321617.1 at chr10:135138927-135150487
NM_015722.3 at chr10:135138928-135150475

RefSeq Genes

CALY at chr10:135137576-135150400 - (NM_001321617) neuron-specific vesicular protein calcyon isoform 2
CALY at chr10:135137576-135150400 - (NM_015722) neuron-specific vesicular protein calcyon isoform 1

Non-Human RefSeq Genes

CALY at chr10:135138961-135150413 - (NM_001266433) neuron-specific vesicular protein calcyon
CALY at chr10:135138936-135142512 - (NM_001075953) neuron-specific vesicular protein calcyon
Caly at chr10:135139438-135142519 - (NM_138915) neuron-specific vesicular protein calcyon
Caly at chr10:135139439-135142514 - (NM_026769) neuron-specific vesicular protein calcyon
Caly at chr10:134880449-135142514 - (NM_001190385) neuron-specific vesicular protein calcyon
Caly at chr10:135139439-135142514 - (NM_001190386) neuron-specific vesicular protein calcyon
Caly at chr10:135139438-135150425 - (NM_001190399) neuron-specific vesicular protein calcyon

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CALY at chr10:135137576-135150400
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

CALY at chr10:135137576-135150400
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CALY at chr10:135137576-135150411
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

CALY at chr10:135137576-135150411
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CALY at chr10:135137576-135150411
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

CALY at chr10:135137576-135150411
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CALY at chr10:135137576-135150411
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

CALY at chr10:135137576-135150411
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135140931-135150376

Basic Gene Annotation Set from GENCODE Version 19

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from GENCODE Version 19

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

CALY at chr10:135138927-135150411
CALY at chr10:135138932-135139679
CALY at chr10:135138932-135139818
CALY at chr10:135139436-135150439
CALY at chr10:135139770-135150475
CALY at chr10:135140931-135150376

International Knockout Mouse Consortium Genes Mapped to Human Genome

Caly_72154 at chr10:135138928-135150475
Caly_92171 at chr10:135138928-135150475
Caly_VG10056 at chr10:135138928-135150475

BC038978 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
  880  100.0%         10     - 135138932 135150376  BC038978     1   880   921

Non-Human Aligned mRNA Search Results

BC049663 - Mus musculus calcyon neuron-specific vesicular protein, mRNA (cDNA clone MGC:58484 IMAGE:6532801), complete cds.
BC120132 - Bos taurus calcyon neuron-specific vesicular protein, mRNA (cDNA clone MGC:142476 IMAGE:8111207), complete cds.
JU334733 - TSA: Macaca mulatta Mamu_525738 mRNA sequence.
JU475784 - TSA: Macaca mulatta Mamu_393427 mRNA sequence.
AY232675 - Mirabilis jalapa CDC48-like protein mRNA, partial cds.
KR081937 - UNVERIFIED: Chamaeleo calyptratus Grem1-like mRNA, partial sequence.
KR081936 - UNVERIFIED: Chamaeleo calyptratus Shh-like mRNA, partial sequence.
KR081935 - UNVERIFIED: Chamaeleo calyptratus Fgf8-like mRNA, partial sequence.
KM597482 - Calyptotis ruficauda VEGF111 splice variant mRNA, partial cds, alternatively spliced.
HM150800 - Calyptorhynchus latirostris SWS1 opsin protein mRNA, partial cds.
JX467155 - TSA: Chamaeleo calyptratus kunitzCcalc493 mRNA sequence.
JX467137 - TSA: Chamaeleo calyptratus CVFCcalc22 mRNA sequence.
KC862214 - Calycanthus occidentalis ribosomal protein S8e family protein mRNA, partial cds.
KC862157 - Calycanthus occidentalis MAIGO1 (mag1) mRNA, partial cds.
MH644814 - Astroides calycularis 70 kDa heat shock protein mRNA, partial cds.
MH231910 - Brachionus calyciflorus autophagy-related protein 5 mRNA, complete cds.
MH231907 - Brachionus calyciflorus GABA receptor-associated protein-like-1 mRNA, complete cds.
MH231906 - Brachionus calyciflorus GABA receptor-associated protein-like-2 mRNA, complete cds.
MH231905 - Brachionus calyciflorus GABA receptor-associated protein-like-3 mRNA, complete cds.
MH231904 - Brachionus calyciflorus microtubule associated protein 1 light chain 3C-like protein mRNA, complete cds.
MH231896 - Brachionus calyciflorus WD repeat domain phosphoinositide-interacting protein mRNA, complete cds.
MF805927 - Brachionus calyciflorus cytochrome p450 CYP4V38 mRNA, complete cds.
AY138129 - Calyptraea chinensis mitochondrial malate dehydrogenase precursor (Mdh) mRNA, partial cds; nuclear gene for mitochondrial product.
KX119431 - Brachionus calyciflorus S6 kinase mRNA, complete cds.
KX119432 - Brachionus calyciflorus S6 kinase mRNA, complete cds.
KX119430 - Brachionus calyciflorus mTOR mRNA, partial cds.
AH010447 - Calyptophthiracarus olivaceus RNA polymerase II largest subunit mRNAs, partial cds.
AF240853 - Calyptophthiracarus olivaceus elongation factor-1alpha mRNA, partial cds.
KC176715 - Brachionus calyciflorus heat shock protein 90 (hsp90) mRNA, complete cds.
KC176714 - Brachionus calyciflorus heat shock protein 70 (hsp70) mRNA, complete cds.
KC176713 - Brachionus calyciflorus heat shock protein 60 (hsp60) mRNA, complete cds.
KC176712 - Brachionus calyciflorus heat shock protein 40 (hsp40) mRNA, complete cds.
JX515578 - Brachionus calyciflorus catalase mRNA, complete cds.
JX441322 - Brachionus calyciflorus beta-actin mRNA, partial cds.
JX156135 - Brachionus calyciflorus RECQ2B (RECQ2B) mRNA, partial cds.
JX156134 - Brachionus calyciflorus RECQ1 (RECQ1) mRNA, partial cds.
JX156104 - Brachionus calyciflorus SMC3B (SM3B) mRNA, partial cds.
JX156102 - Brachionus calyciflorus SMC1 (SMC1) mRNA, partial cds.
JX000006 - Brachionus calyciflorus elongation factor-1alpha mRNA, complete cds.
JX000005 - Brachionus calyciflorus manganese superoxide dismutase (Mn-SOD) mRNA, complete cds.
JQ789916 - Calybites auroguttella voucher Caug acetyl-coA carboxylase mRNA, partial cds.
JQ789391 - Calybites auroguttella voucher Caug putative enolase protein mRNA, partial cds.
JQ789029 - Calybites auroguttella voucher Caug AMP deaminase mRNA, partial cds.
JQ788114 - Calybites auroguttella voucher Caug his-tRNA synthetase mRNA, partial cds.
JQ786294 - Calybites auroguttella voucher Caug glucose phosphate dehydrogenase mRNA, partial cds.
JQ785736 - Calybites auroguttella voucher Caug dopa decarboxylase mRNA, partial cds.
JQ784375 - Calybites auroguttella voucher Caug carbamoylphosphate synthetase/aspartate transcarbamylase/dihydroorotase mRNA, partial cds.
AB003719 - Calyptogena soyoae mRNA for elongation factor-1alpha, partial cds.

Ensembl Genes

CALY at chr10:135139770-135150475 - (ENST00000368556)
CALY at chr10:135138932-135139679 - (ENST00000467433)
CALY at chr10:135138927-135150411 - (ENST00000252939)
CALY at chr10:135138932-135139818 - (ENST00000467611)
CALY at chr10:135139436-135150439 - (ENST00000368558)
CALY at chr10:135140931-135150376 - (ENST00000368555)

Vega Protein-Coding Annotations

OTTHUMT00000051122 at chr10:135138927-135150411
OTTHUMT00000051124 at chr10:135138932-135139679
OTTHUMT00000051123 at chr10:135138932-135139818
OTTHUMT00000051126 at chr10:135139436-135150439
OTTHUMT00000051125 at chr10:135140931-135150376