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UCSC Genes

C9orf24 (uc003zuh.1) at chr9:34379017-34397849 - Homo sapiens chromosome 9 open reading frame 24 (C9orf24), transcript variant 1, mRNA.
C9orf24 (uc022bgb.1) at chr9:34379017-34381598 - Homo sapiens chromosome 9 open reading frame 24 (C9orf24), transcript variant 4, mRNA.
C9orf24 (uc003zui.1) at chr9:34379020-34381598 - Homo sapiens chromosome 9 open reading frame 24 (C9orf24), transcript variant 2, mRNA.
C9orf24 (uc003zug.1) at chr9:34379017-34381598 - Homo sapiens chromosome 9 open reading frame 24 (C9orf24), transcript variant 2, mRNA.
C9orf24 (uc003zuf.1) at chr9:34379017-34381598 - Homo sapiens chromosome 9 open reading frame 24 (C9orf24), transcript variant 3, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_147168.1 at chr9:34379017-34381598
NM_147169.2 at chr9:34379017-34381598
NM_001252195.1 at chr9:34379017-34381598
NM_032596.3 at chr9:34379017-34397849

RefSeq Genes

C9orf24 at chr9:34379018-34381587 - (NM_147168) spermatid-specific manchette-related protein 1 isoform 2
C9orf24 at chr9:34379018-34381587 - (NM_147169) spermatid-specific manchette-related protein 1 isoform 3
C9orf24 at chr9:34379018-34381587 - (NM_001252195) spermatid-specific manchette-related protein 1 isoform 4
C9orf24 at chr9:34379018-34397808 - (NM_032596) spermatid-specific manchette-related protein 1 isoform 1

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397808

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397808
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397808

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397808
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from GENCODE Version 19

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830

Comprehensive Gene Annotation Set from GENCODE Version 19

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34380781
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830
C9orf24 at chr9:34382668-34397527

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

C9orf24 at chr9:34379017-34379773
C9orf24 at chr9:34379017-34380781
C9orf24 at chr9:34379017-34381529
C9orf24 at chr9:34379017-34381536
C9orf24 at chr9:34379017-34381558
C9orf24 at chr9:34379017-34381598
C9orf24 at chr9:34379017-34397830
C9orf24 at chr9:34382668-34397527

Human Aligned mRNA Search Results

BC022084 - Homo sapiens chromosome 9 open reading frame 24, mRNA (cDNA clone MGC:33614 IMAGE:4825995), complete cds.
BC029484 - Homo sapiens chromosome 9 open reading frame 24, mRNA (cDNA clone MGC:32921 IMAGE:5271301), complete cds.

AB071102 Alignments in Non-Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 1084   96.7%          9     +-  34379018  34397785  AB071102     3  1086  1108

Ensembl Genes

C9orf24 at chr9:34379017-34379773 - (ENST00000481295)
C9orf24 at chr9:34379017-34381536 - (ENST00000379126)
C9orf24 at chr9:34379017-34381598 - (ENST00000379133)
C9orf24 at chr9:34379017-34397830 - (ENST00000297623)
C9orf24 at chr9:34379017-34381558 - (ENST00000379127)
C9orf24 at chr9:34379017-34381529 - (ENST00000379124)
C9orf24 at chr9:34382668-34397527 - (ENST00000444429)

Vega Protein-Coding Annotations

OTTHUMT00000001105 at chr9:34379017-34379773
OTTHUMT00000001104 at chr9:34379017-34381529
OTTHUMT00000001103 at chr9:34379017-34380781
OTTHUMT00000001101 at chr9:34379017-34381558
OTTHUMT00000001100 at chr9:34379017-34381598
OTTHUMT00000001099 at chr9:34379017-34381536
OTTHUMT00000001098 at chr9:34379017-34397830
OTTHUMT00000001102 at chr9:34382668-34397527