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UCSC Genes

BCL11A (uc002sae.1) at chr2:60684329-60780633 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 1, mRNA.
BCL11A (uc010ypj.2) at chr2:60678302-60780633 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 2, mRNA.
BCL11A (uc010ypi.2) at chr2:60678302-60780633 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 2, mRNA.
BCL11A (uc010fcg.3) at chr2:60769017-60780633 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 3, mRNA.
BCL11A (uc002saf.1) at chr2:60684329-60780633 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 1, mRNA.
BCL11A (uc002sad.1) at chr2:60684329-60763325 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 1, mRNA.
BCL11A (uc002sac.3) at chr2:60678302-60780633 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 3, mRNA.
BCL11A (uc002sab.3) at chr2:60678302-60780633 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 2, mRNA.
BCL11B (uc001ygb.3) at chr14:99635625-99737822 - Homo sapiens B-cell CLL/lymphoma 11B (zinc finger protein) (BCL11B), transcript variant 2, mRNA.
BCL11B (uc001yga.3) at chr14:99635625-99737822 - Homo sapiens B-cell CLL/lymphoma 11B (zinc finger protein) (BCL11B), transcript variant 1, mRNA.
BCL11B (uc031qqi.1) at chr14:99635625-99737822 - Homo sapiens B-cell CLL/lymphoma 11B (zinc finger protein) (BCL11B), transcript variant 2, mRNA.
BCL11B (uc031qqh.1) at chr14:99635625-99737822 - Homo sapiens B-cell CLL/lymphoma 11B (zinc finger protein) (BCL11B), transcript variant 1, mRNA.
KLF1 (uc002mvo.3) at chr19:12995237-12998017 - Homo sapiens Kruppel-like factor 1 (erythroid) (KLF1), mRNA.
PIAS3 (uc001eoc.1) at chr1:145575988-145586546 - Homo sapiens protein inhibitor of activated STAT, 3 (PIAS3), mRNA.
UBE2I (uc002cld.2) at chr16:1359154-1377019 - Homo sapiens ubiquitin-conjugating enzyme E2I (UBE2I), transcript variant 3, mRNA.
UBE2I (uc002clg.2) at chr16:1359628-1377019 - Homo sapiens ubiquitin-conjugating enzyme E2I (UBE2I), transcript variant 1, mRNA.
UBE2I (uc002clf.2) at chr16:1359628-1377019 - Homo sapiens ubiquitin-conjugating enzyme E2I (UBE2I), transcript variant 2, mRNA.
UBE2I (uc002clc.2) at chr16:1359154-1377019 - Homo sapiens ubiquitin-conjugating enzyme E2I (UBE2I), transcript variant 4, mRNA.
SUMO1 (uc002uyz.1) at chr2:203070903-203103322 - Homo sapiens small ubiquitin-like modifier 1 (SUMO1), transcript variant 1, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_018014.3 at chr2:60678302-60780633
NM_138559.1 at chr2:60678302-60780633
NM_022893.3 at chr2:60684329-60780633

RefSeq Genes

BCL11A at chr2:60684329-60780633 - (NM_001365609) B-cell lymphoma/leukemia 11A isoform 5
BCL11A at chr2:60677655-60780789 - (NM_018014) B-cell lymphoma/leukemia 11A isoform 2
BCL11A at chr2:60678302-60780633 - (NM_001363864) B-cell lymphoma/leukemia 11A isoform 4
BCL11A at chr2:60677655-60780789 - (NM_138559) B-cell lymphoma/leukemia 11A isoform 3
BCL11A at chr2:60684329-60780789 - (NM_022893) B-cell lymphoma/leukemia 11A isoform 1

Non-Human RefSeq Genes

bcl11a at chr2:60687013-60780568 - (NM_001079189) B-cell lymphoma/leukemia 11A
BCL11A at chr2:60440184-60780793 - (NM_001031031) B-cell lymphoma/leukemia 11A
Bcl11a at chr2:60678965-60778043 - (NM_001159290) B-cell lymphoma/leukemia 11A isoform 3
Bcl11a at chr2:60678965-60780767 - (NM_016707) B-cell lymphoma/leukemia 11A isoform 1
Bcl11a at chr2:60684330-60780767 - (NM_001242934) B-cell lymphoma/leukemia 11A isoform 4
Bcl11a at chr2:60678965-60780767 - (NM_001159289) B-cell lymphoma/leukemia 11A isoform 2
Bcl11a at chr2:60687539-60780613 - (NM_001191683) B-cell lymphoma/leukemia 11A
BCL11A at chr2:60679545-60780421 - (NM_001297634) B-cell lymphoma/leukemia 11A
BCL11A at chr2:60679293-60780789 - (NM_001076121) B-cell lymphoma/leukemia 11A
bcl11aa at chr2:60687187-60780532 - (NM_001040391) B-cell lymphoma/leukemia 11A
bcl11ab at chr2:60687539-60780767 - (NM_001100951) BAF chromatin remodeling complex subunit BCL11A b
bcl11a.L at chr2:60687818-60780595 - (NM_001089877) BCL11A, BAF complex component L homeolog

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

BCL11A at chr2:60677655-60781602
BCL11A at chr2:60678281-60780706
BCL11A at chr2:60678302-60780769
BCL11A at chr2:60678916-60778060
BCL11A at chr2:60679293-60780693
BCL11A at chr2:60679557-60780544
BCL11A at chr2:60684327-60782289
BCL11A at chr2:60684814-60780793
BCL11A at chr2:60749216-60780596
BCL11A at chr2:60768918-60780635
BCL11A at chr2:60768979-60780767

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

BCL11A at chr2:60677655-60781602
BCL11A at chr2:60678281-60780706
BCL11A at chr2:60678302-60780769
BCL11A at chr2:60678916-60778060
BCL11A at chr2:60679025-60773336
BCL11A at chr2:60679293-60687591
BCL11A at chr2:60679293-60780693
BCL11A at chr2:60679295-60680216
BCL11A at chr2:60679449-60778042
BCL11A at chr2:60679557-60780544
BCL11A at chr2:60679635-60780642
BCL11A at chr2:60679655-60755670
BCL11A at chr2:60679784-60711600
BCL11A at chr2:60684327-60782289
BCL11A at chr2:60684814-60780793
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60689039-60778042
BCL11A at chr2:60689044-60754990
BCL11A at chr2:60695875-60773529
BCL11A at chr2:60749216-60780596
BCL11A at chr2:60751624-60755350
BCL11A at chr2:60759995-60773418
BCL11A at chr2:60768918-60780635
BCL11A at chr2:60768976-60773394
BCL11A at chr2:60768979-60780767
BCL11A at chr2:60771365-60773315
BCL11A at chr2:60773053-60777048

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

BCL11A at chr2:60677655-60781602
BCL11A at chr2:60678281-60780706
BCL11A at chr2:60678302-60780769
BCL11A at chr2:60678916-60778060
BCL11A at chr2:60679293-60780693
BCL11A at chr2:60679557-60780544
BCL11A at chr2:60684327-60782289
BCL11A at chr2:60684814-60780793
BCL11A at chr2:60749216-60780596
BCL11A at chr2:60768918-60780635
BCL11A at chr2:60768979-60780767

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

BCL11A at chr2:60677655-60781602
BCL11A at chr2:60678281-60780706
BCL11A at chr2:60678302-60780769
BCL11A at chr2:60678916-60778060
BCL11A at chr2:60679025-60773336
BCL11A at chr2:60679293-60687591
BCL11A at chr2:60679293-60780693
BCL11A at chr2:60679295-60680216
BCL11A at chr2:60679449-60778042
BCL11A at chr2:60679557-60780544
BCL11A at chr2:60679635-60780642
BCL11A at chr2:60679655-60755670
BCL11A at chr2:60679784-60711600
BCL11A at chr2:60684327-60782289
BCL11A at chr2:60684814-60780793
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60689039-60778042
BCL11A at chr2:60689044-60754990
BCL11A at chr2:60695875-60773529
BCL11A at chr2:60749216-60780596
BCL11A at chr2:60751624-60755350
BCL11A at chr2:60759995-60773418
BCL11A at chr2:60768918-60780635
BCL11A at chr2:60768976-60773394
BCL11A at chr2:60768979-60780767
BCL11A at chr2:60771365-60773315
BCL11A at chr2:60773053-60777048

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60768920-60780635

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60679289-60687590
BCL11A at chr2:60679635-60780642
BCL11A at chr2:60679712-60755670
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60768920-60780635
BCL11A at chr2:60771365-60773315

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60768920-60780635

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60679289-60687590
BCL11A at chr2:60679635-60780642
BCL11A at chr2:60679712-60755670
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60768920-60780635
BCL11A at chr2:60771365-60773315

Basic Gene Annotation Set from GENCODE Version 19

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566

Comprehensive Gene Annotation Set from GENCODE Version 19

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60679289-60687590
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60679712-60755670
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60769017-60780635
BCL11A at chr2:60771365-60773315

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60679289-60687590
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60679712-60755670
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60769017-60780635
BCL11A at chr2:60771365-60773315

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60679289-60687590
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60679712-60755670
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60769017-60780635
BCL11A at chr2:60771365-60773315

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

BCL11A at chr2:60678302-60780538
BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

BCL11A at chr2:60678302-60780538
BCL11A at chr2:60678302-60780634
BCL11A at chr2:60678302-60780702
BCL11A at chr2:60678916-60778049
BCL11A at chr2:60679289-60687590
BCL11A at chr2:60679557-60780540
BCL11A at chr2:60679635-60780617
BCL11A at chr2:60679712-60755670
BCL11A at chr2:60684333-60780633
BCL11A at chr2:60686955-60763341
BCL11A at chr2:60687409-60780566
BCL11A at chr2:60769017-60780635
BCL11A at chr2:60771365-60773315

International Knockout Mouse Consortium Genes Mapped to Human Genome

Bcl11a_31358 at chr2:60678302-60780633
Bcl11a_76276 at chr2:60678302-60780633
Bcl11a_83891 at chr2:60678302-60780633
Bcl11a_VG13390 at chr2:60678302-60780633

Human Aligned mRNA Search Results

JN852960 - Homo sapiens BCL11a-M (BCL11A) mRNA, partial cds, alternatively spliced.
AJ404613 - Homo sapiens mRNA for B-cell lymphoma/leukaemia 11A short form (BCL11A-S gene).
AJ404612 - Homo sapiens mRNA for B-cell lymphoma/leukaemia 11A long form (BCL11A-L gene).
AJ404611 - Homo sapiens mRNA for B-cell lymphoma/leukaemia 11A extra long form (BCL11A-XL gene).
AY228763 - Homo sapiens B-cell CLL/lymphoma 11A isoform 6 (BCL11A) mRNA, complete cds.
AY692278 - Homo sapiens B-cell lymphoma/leukaemia 11A extra-short form (BCL11A) mRNA, complete cds, alternatively spliced.
BC021098 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein), mRNA (cDNA clone MGC:31810 IMAGE:5087967), complete cds.

Non-Human Aligned mRNA Search Results

BC010585 - Mus musculus B-cell CLL/lymphoma 11A (zinc finger protein), mRNA (cDNA clone MGC:19371 IMAGE:2631265), complete cds.
BC051418 - Mus musculus B-cell CLL/lymphoma 11A (zinc finger protein), mRNA (cDNA clone IMAGE:2655319), complete cds.
BC086607 - Rattus norvegicus B-cell CLL/lymphoma 11A (zinc finger protein), mRNA (cDNA clone IMAGE:7318742), complete cds.
BC158689 - Rattus norvegicus B-cell CLL/lymphoma 11A (zinc finger protein), mRNA (cDNA clone MGC:187706 IMAGE:8375842), complete cds.
BC115319 - Danio rerio B-cell CLL/lymphoma 11A, mRNA (cDNA clone MGC:136898 IMAGE:7992371), complete cds.
BC123944 - Xenopus tropicalis B-cell CLL/lymphoma 11A (zinc finger protein), mRNA (cDNA clone MGC:146233 IMAGE:7688113), complete cds.
MG576284 - UNVERIFIED: Gallus gallus Bcl11a mRNA, partial sequence.
MG576305 - UNVERIFIED: Sturnus vulgaris Bcl11a mRNA, partial sequence.
MG576308 - UNVERIFIED: Alligator mississippiensis Bcl11a mRNA, partial sequence.
KJ652909 - Sus scrofa B-cell CLL/lymphoma 11A (BCL11A) mRNA, complete cds.
LC016540 - Bos taurus BCL11A mRNA for B-cell CLL/lymphoma 11A, complete cds.
BC118227 - Bos taurus B-cell CLL/lymphoma 11A (zinc finger protein), mRNA (cDNA clone MGC:139389 IMAGE:8279353), complete cds.
JT405814 - TSA: Ictalurus punctatus clc_264219 mRNA sequence.
JU324755 - TSA: Macaca mulatta Mamu_518104 mRNA sequence.
JU328154 - TSA: Macaca mulatta Mamu_518102 mRNA sequence.
JU331656 - TSA: Macaca mulatta Mamu_518103 mRNA sequence.
JU335020 - TSA: Macaca mulatta Mamu_518105 mRNA sequence.
JU472470 - TSA: Macaca mulatta Mamu_376716 mRNA sequence.
JU476023 - TSA: Macaca mulatta Mamu_376714 mRNA sequence.
KC594099 - Meleagris gallopavo B-cell CLL/lymphoma 11A (BCL11A) mRNA, partial cds.

Ensembl Genes

BCL11A at chr2:60769017-60780635 - (ENST00000409351)
BCL11A at chr2:60686955-60763341 - (ENST00000477659)
BCL11A at chr2:60679712-60755670 - (ENST00000492272)
BCL11A at chr2:60679557-60780540 - (ENST00000538214)
BCL11A at chr2:60678916-60778049 - (ENST00000489516)
BCL11A at chr2:60678302-60780702 - (ENST00000359629)
BCL11A at chr2:60678302-60780634 - (ENST00000356842)
BCL11A at chr2:60679289-60687590 - (ENST00000479026)
BCL11A at chr2:60679635-60780617 - (ENST00000537768)
BCL11A at chr2:60684333-60780633 - (ENST00000335712)
BCL11A at chr2:60687409-60780566 - (ENST00000358510)
BCL11A at chr2:60771365-60773315 - (ENST00000489183)

GeneReviews

BCL11A-Related Intellectual Disability at chr2:60678302-60780633 - (BCL11A)

Vega Protein-Coding Annotations

OTTHUMT00000325349 at chr2:60678302-60780702
OTTHUMT00000251578 at chr2:60678302-60780634
OTTHUMT00000327044 at chr2:60678916-60778049
OTTHUMT00000327049 at chr2:60679289-60687590
OTTHUMT00000327042 at chr2:60679292-60780768
OTTHUMT00000327046 at chr2:60679293-60780670
OTTHUMT00000327047 at chr2:60679712-60755670
OTTHUMT00000251579 at chr2:60684333-60780633
OTTHUMT00000327045 at chr2:60686955-60763341
OTTHUMT00000327043 at chr2:60687409-60780566
OTTHUMT00000327041 at chr2:60769017-60780635
OTTHUMT00000327048 at chr2:60771365-60773315