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UCSC Genes

ATN1 (uc001qrw.1) at chr12:7033626-7053815 - Homo sapiens atrophin 1 (ATN1), transcript variant 1, mRNA.
ATN1 (uc001qry.1) at chr12:7043003-7045891 - Homo sapiens atrophin 1 (ATN1), transcript variant 2, mRNA.
ATN1 (uc001qrx.1) at chr12:7037480-7053815 - Homo sapiens atrophin 1 (ATN1), transcript variant 2, mRNA.
PLEKHA5 (uc009zin.3) at chr12:19282626-19529333 - Homo sapiens pleckstrin homology domain containing, family A member 5 (PLEKHA5), transcript variant 1, mRNA.
PLEKHA5 (uc001reb.3) at chr12:19282626-19529333 - Homo sapiens pleckstrin homology domain containing, family A member 5 (PLEKHA5), transcript variant 1, mRNA.
NR2E1 (uc003psg.3) at chr6:108487215-108510013 - Homo sapiens nuclear receptor subfamily 2, group E, member 1 (NR2E1), mRNA.
EFEMP2 (uc001ofy.4) at chr11:65633912-65640405 - Homo sapiens EGF containing fibulin-like extracellular matrix protein 2 (EFEMP2), transcript variant 1, mRNA.
RBFOX1 (uc010uyb.1) at chr16:6823810-7763340 - Homo sapiens RNA binding protein, fox-1 homolog (C. elegans) 1 (RBFOX1), transcript variant 6, mRNA.
RBFOX1 (uc002cys.2) at chr16:6069132-7763340 - Homo sapiens RNA binding protein, fox-1 homolog (C. elegans) 1 (RBFOX1), transcript variant 4, mRNA.
RBFOX1 (uc010buf.1) at chr16:6069132-7703949 - Homo sapiens RNA binding protein, fox-1 homolog (C. elegans) 1 (RBFOX1), transcript variant 4, mRNA.
RBFOX1 (uc002cyv.1) at chr16:6533794-7703949 - Homo sapiens RNA binding protein, fox-1 homolog (C. elegans) 1 (RBFOX1), transcript variant 4, mRNA.
EFEMP1 (uc002rzi.3) at chr2:56093097-56151298 - Homo sapiens EGF containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 2, mRNA.
EFEMP1 (uc002rzj.3) at chr2:56093097-56151298 - Homo sapiens EGF containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 3, mRNA.
RUNX1T1 (uc022axv.1) at chr8:92967195-93115454 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 2, mRNA.
RUNX1T1 (uc022axt.1) at chr8:92967195-93111916 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 9, mRNA.
RUNX1T1 (uc022axs.1) at chr8:92967195-93107882 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 15, mRNA.
RUNX1T1 (uc022axr.1) at chr8:92967195-93107882 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 12, mRNA.
RUNX1T1 (uc022axq.1) at chr8:92967195-93107882 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 7, mRNA.
RUNX1T1 (uc022axp.1) at chr8:92967195-93107882 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 8, mRNA.
RUNX1T1 (uc022axo.1) at chr8:92967195-93107490 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 10, mRNA.
RUNX1T1 (uc003yfe.2) at chr8:92967195-93107490 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 3, mRNA.
RUNX1T1 (uc003yfd.3) at chr8:92967195-93107490 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 11, mRNA.
RUNX1T1 (uc003yfb.2) at chr8:92967195-93029908 - Homo sapiens runt-related transcription factor 1; translocated to, 1 (cyclin D-related) (RUNX1T1), transcript variant 4, mRNA.
FAT1 (uc003izf.3) at chr4:187508937-187644987 - Homo sapiens FAT tumor suppressor homolog 1 (Drosophila) (FAT1), mRNA.
WWP2 (uc002exv.2) at chr16:69796187-69975644 - Homo sapiens WW domain containing E3 ubiquitin protein ligase 2 (WWP2), transcript variant 5, mRNA.
WWP2 (uc010vlm.2) at chr16:69872640-69975644 - Homo sapiens WW domain containing E3 ubiquitin protein ligase 2 (WWP2), transcript variant 4, mRNA.
WWP2 (uc002exu.2) at chr16:69796187-69975644 - Homo sapiens WW domain containing E3 ubiquitin protein ligase 2 (WWP2), transcript variant 1, mRNA.
WWP2 (uc010vln.2) at chr16:69951486-69975644 - Homo sapiens WW domain containing E3 ubiquitin protein ligase 2 (WWP2), transcript variant 4, mRNA.
BAIAP2 (uc002jzg.2) at chr17:79008947-79091232 - Homo sapiens BAI1-associated protein 2 (BAIAP2), transcript variant 2, mRNA.
BAIAP2 (uc002jyz.4) at chr17:79008947-79083174 - Homo sapiens BAI1-associated protein 2 (BAIAP2), transcript variant 1, mRNA.
TRIP6 (uc003uww.3) at chr7:100464950-100471076 - Homo sapiens thyroid hormone receptor interactor 6 (TRIP6), mRNA.
PSME3 (uc002ibs.4) at chr17:40985159-40995777 - Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 3, mRNA.
PSME3 (uc002ibr.4) at chr17:40985159-40995777 - Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 1, mRNA.
PSME3 (uc002ibp.3) at chr17:40976443-40995777 - Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 1, mRNA.
PSME3 (uc031ram.1) at chr17:40985159-40995777 - Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 1, mRNA.
ITCH (uc010geu.2) at chr20:32951041-33099198 - Homo sapiens itchy E3 ubiquitin protein ligase (ITCH), transcript variant 1, mRNA.
RERE (uc001apf.3) at chr1:8412464-8877699 - Homo sapiens arginine-glutamic acid dipeptide (RE) repeats (RERE), transcript variant 2, mRNA.
RERE (uc001ape.3) at chr1:8412464-8877699 - Homo sapiens arginine-glutamic acid dipeptide (RE) repeats (RERE), transcript variant 1, mRNA.
RERE (uc001apd.3) at chr1:8412464-8483747 - Homo sapiens arginine-glutamic acid dipeptide (RE) repeats (RERE), transcript variant 3, mRNA.

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_001007026.1 at chr12:7033626-7051484
NM_001940.3 at chr12:7037480-7051484

RefSeq Genes

ATN1 at chr12:7033622-7051484 - (NM_001007026) atrophin-1
ATN1 at chr12:7037122-7051484 - (NM_001940) atrophin-1

Non-Human RefSeq Genes

ATN1 at chr12:7043061-7051484 - (NM_001205748) atrophin-1
Atn1 at chr12:7037464-7051484 - (NM_017228) atrophin-1
ATN1 at chr12:7043165-7050943 - (NM_001034165) atrophin-1
Atn1 at chr12:7037464-7051484 - (NM_007881) atrophin-1

Basic Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037122-7051484

Comprehensive Gene Annotation Set from GENCODE Version 33lift37 (Ensembl 99)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037122-7051484
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037122-7051484

Comprehensive Gene Annotation Set from GENCODE Version 31lift37 (Ensembl 97)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037122-7051484
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426

Comprehensive Gene Annotation Set from GENCODE Version 28lift37 (Ensembl 92)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426

Comprehensive Gene Annotation Set from GENCODE Version 27lift37 (Ensembl 90)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426

Comprehensive Gene Annotation Set from GENCODE Version 24lift37 (Ensembl 83)

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from GENCODE Version 19

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426

Comprehensive Gene Annotation Set from GENCODE Version 19

ATN1 at chr12:7033626-7051484
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from ENCODE/GENCODE Version 17

ATN1 at chr12:7033626-7051426
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7043000-7051484

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 17

ATN1 at chr12:7033626-7051426
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7043000-7051484
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from ENCODE/GENCODE Version 14

ATN1 at chr12:7033626-7051426
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7043000-7051484

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 14

ATN1 at chr12:7033626-7051426
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7043000-7051484
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Basic Gene Annotation Set from ENCODE/GENCODE Version 7

ATN1 at chr12:7033626-7051426
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7043000-7051484
ATN1 at chr12:7045545-7051482

Comprehensive Gene Annotation Set from ENCODE/GENCODE Version 7

ATN1 at chr12:7033626-7051426
ATN1 at chr12:7037476-7051426
ATN1 at chr12:7043000-7051484
ATN1 at chr12:7045545-7051482
ATN1 at chr12:7046861-7048128
ATN1 at chr12:7048270-7051220

Retroposed Genes V5, Including Pseudogenes

ATN1_HUMAN at chr1:163738493-163739009 - (NM_138425.2-1)
ATN1 at chr1:163738493-163739009 - (NM_138425.2-1)

International Knockout Mouse Consortium Genes Mapped to Human Genome

Atn1_25096 at chr12:7033626-7051484
Atn1_73673 at chr12:7033626-7051484
Atn1_77392 at chr12:7033626-7051484
Atn1_VG12251 at chr12:7033626-7051484

BC051795 Alignments in Human Aligned mRNAs

This aligns in multiple positions. Click on a hyperlink to go to tracks display at a particular alignment.
 SIZE IDENTITY CHROMOSOME STRAND  START     END       cDNA   START  END  TOTAL
------------------------------------------------------------------------------
 4347  100.0%         12     +   7033626   7051480  BC051795    12  4361  4382

Non-Human Aligned mRNA Search Results

BC149148 - Bos taurus atrophin 1, mRNA (cDNA clone IMAGE:8086414), partial cds.
AJ781093 - Squalus acanthias mRNA for Na, K-ATPase alpha subunit (atn1 gene).
BC050920 - Mus musculus atrophin 1, mRNA (cDNA clone MGC:63230 IMAGE:6406687), complete cds.
BC053051 - Mus musculus atrophin 1, mRNA (cDNA clone MGC:62322 IMAGE:5706586), complete cds.
JU474562 - TSA: Macaca mulatta Mamu_364857 mRNA sequence.
JV046353 - TSA: Macaca mulatta Mamu_404532 mRNA sequence.
LR129948 - Euperipatoides kanangrensis mRNA for atonal (Eka-atonal gene), clone atn1.

Ensembl Genes

ATN1 at chr12:7046861-7048128 - (ENST00000541029)
ATN1 at chr12:7033626-7051484 - (ENST00000356654)
MATN1-AS1 at chr1:31191629-31194570 - (ENST00000414763)
MATN1-AS1 at chr1:31191351-31199591 - (ENST00000414532)
MATN1 at chr1:31186614-31188982 - (ENST00000494561)
MATN1 at chr1:31184124-31196434 - (ENST00000373765)
MATN1 at chr1:31188873-31192098 - (ENST00000477320)
MATN1-AS1 at chr1:31191619-31199674 - (ENST00000454613)
MATN1-AS1 at chr1:31198567-31199211 - (ENST00000443076)
ATN1 at chr12:7037476-7051426 - (ENST00000396684)
ATN1 at chr12:7048270-7051220 - (ENST00000537488)

GeneReviews

ATN1 at chr12:7033626-7053815