PGA4 variants Track Settings

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PGA4 genetic variants

Display mode:

Exclude variants with Quality/confidence score (QUAL) score less than
Exclude variants with these FILTER values:

	LowQual (Low quality)
	VQSRTrancheINDEL99.90to100.00+ (Truth sensitivity tranche level for INDEL model at VQS Lod < -55874.6104)
	VQSRTrancheINDEL99.90to100.00 (Truth sensitivity tranche level for INDEL model at VQS Lod: -55874.6104 <= x < -8.5934)
	VQSRTrancheSNP99.90to100.00+ (Truth sensitivity tranche level for SNP model at VQS Lod < -249204.39)
	VQSRTrancheSNP99.90to100.00 (Truth sensitivity tranche level for SNP model at VQS Lod: -249204.39 <= x < -2.9303)

Minimum minor allele frequency (if INFO column includes AF or AC+AN):

Display data as a density graph:

VCF configuration help

Assembly: Human Feb. 2009 (GRCh37/hg19)