Schema for Scaffolds - GRCh38 Defined Scaffold Identifiers
  Database: hg38    Primary Table: scaffolds    Row Count: 455   Data last updated: 2013-12-26
Format description: Browser extensible data
fieldexampleSQL type info description
bin 0smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 248956422int(10) unsigned range End position in chromosome
name 1varchar(255) values Name of item

Sample Rows
 
binchromchromStartchromEndname
0chr102489564221
0chr10013379742210
73chr10_GL383545v1_alt0179254HSCHR10_1_CTG1
73chr10_GL383546v1_alt0309802HSCHR10_1_CTG2
73chr10_KI270824v1_alt0181496HSCHR10_1_CTG3
73chr10_KI270825v1_alt0188315HSCHR10_1_CTG4
0chr11013508662211
73chr11_GL383547v1_alt0154407HSCHR11_1_CTG1_1
73chr11_JH159136v1_alt0200998HG142_HG150_NOVEL_TEST
73chr11_JH159137v1_alt0191409HG151_NOVEL_TEST

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Scaffolds (scaffolds) Track Description
 

Description

This track shows the Genome Reference Consortium (GRC) names for the scaffolds in the GRCh38 (hg38) assembly, downloaded from the GRCh38 acc2name file in GenBank.