Other Species Alignments for knownGene uc003vim.4
 
MAF table:

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Species selection:  + - default

  Primate  + -

chimp
gorilla
orangutan
gibbon
rhesus
crab-eating macaque
baboon
green monkey
marmoset
squirrel monkey
bushbaby

  Euarchontoglires  + -

chinese tree shrew
squirrel
lesser Egyptian jerboa
prairie vole
chinese hamster
golden hamster
mouse
rat
naked mole-rat
guinea pig
chinchilla
brush-tailed rat
rabbit
pika

  Laurasiatheria  + -

pig
alpaca
bactrian camel
dolphin
killer whale
tibetan antelope
cow
sheep
domestic goat
horse
white rhinoceros
cat
dog
ferret
panda
pacific walrus
weddell seal
black flying-fox
megabat
david's myotis (bat)
microbat
big brown bat
hedgehog
shrew
star-nosed mole

  Afrotheria  + -

elephant
cape elephant shrew
manatee
cape golden mole
tenrec
aardvark

  Mammal  + -

armadillo
opossum
tasmanian devil
wallaby
platypus

  Birds  + -

saker falcon
peregrine falcon
collared flycatcher
white-throated sparrow
medium ground finch
zebra finch
tibetan ground jay
budgerigar
parrot
scarlet macaw
rock pigeon
mallard duck
chicken
turkey

  Sarcopterygii  + -

american alligator
green seaturtle
painted turtle
chinese softshell turtle
spiny softshell turtle
lizard
x. tropicalis
coelacanth

  Fish  + -

tetraodon
fugu
yellowbelly pufferfish
nile tilapia
princess of Burundi
burton's mouthbreeder
zebra mbuna
pundamilia nyererei
medaka
southern platyfish
stickleback
atlantic cod
zebrafish
mexican tetra (cavefish)
spotted gar
lamprey

For information about output data format see the User's Guide
>uc003vim.4_hg19 96 chr7:116593396-116593683-
MKNHTVHRYVQDQTMQDLSCSRKPVAASAMFQRSSLLPRLLVSAGMIHRPGGAARAAAAAAARAPPEPARRRGRGLGGKSRGPRARRLFLLQPYCZ
>uc003vim.4_panTro4 96 chr7:118441908-118442195-
MKNHTVHRYVQDQTMQDLSCSRKPVAASAMFQRSSLLPRLSVSAGMIHRPGGAARAAAAAAARAPPEPARRRGRGLGGKSRGPRARRLFLLQPYCZ
>uc003vim.4_gorGor3 96 chr7:114844161-114844248-
-------------------------------------------------------------------PARRRGRGLGGKSRGPRARRLFLLQPYCZ
>uc003vim.4_ponAbe2 96 chr7:113485381-113485668-
MKNHTVHRZVQDQSIPDLSCSRKPVKKZAMFQRCSLLPWLSVSAGMIHRPGGAARAAAAAAARAPPEPARRWGRGRGGKSRGPRARRLFLLLPYCZ
>uc003vim.4_nomLeu3 96 chr13:68084632-68084907-
MKNHTVHRYVQDQTMQDLSCSRKPVA---------QP------------------------------PARRRGRGRGGKSRGLRARRLFLLQPYCZ
>uc003vim.4_rheMac3 96 chr3:155760927-155760983-
-----------------------------------------------------------------------------GKSRGPRARRLFLLQPYCZ
>uc003vim.4_macFas5 96 chr3:149458680-149459003-
MKNHTVHRYVQDQTMQDLSCSRKPVAASAMFQRCSLLPRLSVSAGMIHRPGGAAR-----------X----------GKSRGPRARRLFLLQPYCZ
>uc003vim.4_papHam1 96 scaffold23701:8962-9249+
MKNHTVHRYVQDQTMQDLSCSRKPVAASAMFQLCSLLPRLSVSAGMIHRPGGAARAAAAAAARAPPEPARRRGRGSGGKSRGPRARRLFLLQPYCZ
>uc003vim.4_chlSab1 96 chr21:85632648-85632935-
MKNHTVHRYVQDQTMQDLSCSRKPVAASAMFQRCSLLPRLSVSAGMIHRPGGAARAAAAAAARAPPEPARRRGRGSGGKSRGPRARRLFLLQPYCZ
>uc003vim.4_calJac3 96 chr8:85829785-85829834-
MKNHTVHKYVQDQTMQ--------------------------------------------------------------------------------
>uc003vim.4_saiBol1 96 JH378107:18695043-18695090+
--------------------------------------------------------------------------------RGPRACRLFLLQPFCZ
>uc003vim.4_otoGar3 96 GL873556:11120565-11120876+
MKNHTVQRYVQDQTMQDLSCSRKPVAASAIFQRCSLLPRLSVSAGMIH---------------------------------GPRARRLL--QPCCZ
>uc003vim.4_tupChi1 96 KB360761:1101262-1101302+
----------------------------------------------------------------------------------PRARSLFL-RAYCK
>uc003vim.4_speTri2 96 JH393399:2160804-2160809+
-------------------------------------------------------------------------------------------R----
>uc003vim.4_jacJac1 96 JH725463:17919082-17919154-
--------------------------------------------------------------------------GRRGKPPGP--------E----
>uc003vim.4_micOch1 96 chrLG10:12545264-12545570-
MKNHTVHRZVHDHTMQDLSCSRKPAAASAIFRRCCGPPRRSLAAGMIHRP-G----------------AR----GCGGKPRGL--------E----
>uc003vim.4_mesAur1 96 KB708234:1124318-1124367+
-------------------------------------------------------------------PA-----GRGGKPRGL--------E----
>uc003vim.4_mm10 96 chr6:17694050-17694300-
RKNHTVHRZVHDHTMQDLSCSRKPAPASAIFRRCYGPPRRSLSAGMIHPP-GTARAAAAARAR-SPELARR---GCGGKARGL--------E----
>uc003vim.4_rn5 96 chr4:45604832-45605078-
RKNHTVHRZVHDHTMQDLSCSRKPEPASAIFRRCCGPPRRSLATGMIHRP-GTARAAAA-RAR-PP-FARR---GCGGKPRGL--------E----
>uc003vim.4_hetGla2 96 JH602140:2448410-2448692+
MKNHTVQRZVQDQTMQDLSCSRKPVAASAIFQRCSLLPR-SPSAGMIHRPRGAARAVAVAAARAPP-PARR---GRGGKSRGPR-RRLCL-QPYCQ
>uc003vim.4_oryCun2 96 chr7:28296940-28297113+
---------------------------------------------MIPRLRSAARAPTAGAARAAPMPAGG---GRGGKPRGQRARLLSL-R----
>uc003vim.4_ochPri3 96 JH802113:4455036-4455040-
-------------------------------------------------------------------------------------------R----
>uc003vim.4_susScr3 96 chr18:31232024-31232328+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFRRCSLLPRLSVSAGMIHRPGGAARAAAAAAARAPPKPARR---GSGGKSRRPRARL-S--QPYCZ
>uc003vim.4_vicPac2 96 KB632493:3146967-3147032-
---------------------------------------------------------------------------RGGKSRGPRARLPS--QSYCZ
>uc003vim.4_camFer1 96 KB016607:693434-693483-
--------------------------------------------------------------------------------RGPRARLPS--QSYCZ
>uc003vim.4_turTru2 96 JH486820:4045-4352+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFRRCSLLPRLSVSAGMIHRPGGAARAAAAAAAPAPPELARR---GRGGKSRESRARLPF--QPZCZ
>uc003vim.4_orcOrc1 96 KB316874:2645862-2646167+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFRRCSLLPRLSVSAGMIHRPGGAARAAAAAAAPAPPELARR---GRGGKSRESRARLPF--QPZCZ
>uc003vim.4_panHod1 96 KE111997:1160079-1160159-
----------------------------------------------------------------------R---GRGGKSRGPRARWPF--QPYYZ
>uc003vim.4_bosTau7 96 chr4:53200947-53201227+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFRRCSLLPRLSVSAGMIHRPGGAARAAAAA-ARAPPEAA-----GRGGKSRGPRA-WPF--QPYYZ
>uc003vim.4_oviAri3 96 chr4:51381194-51381458+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFRRCSLLPRLSVSAGMIHRPGGAARGAAXX------EAA-----GRGGKSRGPRARWPF--QPYYZ
>uc003vim.4_capHir1 96 chr4:48950376-48950398+
----------------------------------------------------------------------------------------F--QPYYZ
>uc003vim.4_equCab2 96 chr4:74037934-74038223-
MKNHTVQRZVHDQTMQDLSCSRKPVPASAIFRRCSLLPRLSVSAGMIHRPGGPARAAAA-AARAPPEPARR---GRGGKSRRPR-RSPR--ZPSCZ
>uc003vim.4_cerSim1 96 JH767724:11175593-11175875+
MKNHTVQRZVHDHTMQDLSCSRKPVPASAIFRRCSLLPR-SVSAGMIHRPRGAARAAA---ARAPPEPARR---GRGGKSRGPRARLPS--QPDCZ
>uc003vim.4_felCat5 96 chrA2:135346839-135347140-
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFQRCSLLPRLSVSAGMIHRPGGAARAAAAAVAR-PPEPARR---GRGGKSRGPRTRLPS--QPYCZ
>uc003vim.4_canFam3 96 chr14:55853039-55853333-
RKNHTVHRYVQDQTMQDLSCSSKPAPASAIFQRRPPPPR-SACAAMIHRPGAAAPAPAPAAARAPPEPA-G---GR--A--LPR-PRPL--PARSR
>uc003vim.4_musFur1 96 GL896904:20833062-20833121+
----------------------------------------------------------------------------GGKSRGPRTRLPS--PAYCZ
>uc003vim.4_ailMel1 96 GL192534.1:1608362-1608494+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFQL----------------------------------------------------RLPS--PAYCZ
>uc003vim.4_odoRosDiv1 96 KB229255:1385402-1385701+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAIFQRCSLLPRLSVSAGMIHRPGGAARAAAAAVARAPPEPARR---GRGGKSRRPPTRLPS--PAYCZ
>uc003vim.4_lepWed1 96 KB714831:1282679-1282727-
--------------------------------------------------------------------------------RGPPTRLPS--PAYCQ
>uc003vim.4_pteAle1 96 KB030581:18924369-18924658+
MKNHTVQRZVQDQTMQDLSCSRKPVPASAMFQRCSLLPRLSVSVGMIHRPRGAARAAAAAALRASPEPSRR---GRGGKSSGPQARLPS--QPYCZ
>uc003vim.4_pteVam1 96 scaffold_17413:19130-19419-
MKNHTVQRZVQDQTMQDLSCSRKPVPASAMFQRCSLLPRLSVSVGMIHRPRGAARAAAAAALRASPEPSRR---GRGGKSSGPQARLPS--QPYCZ
>uc003vim.4_eriEur2 96 JH835556:2095403-2095684-
MKNHTVQRZVQDQTIQDLSCSRKPVPASAIFQRCSLLPRRSVSAGMIHGP-GAARATAGAATRAPSSRF-R---RRGGK-----ARGPF--QPYCE
>uc003vim.4_conCri1 96 JH655882:51646681-51646728-
--------------------------------------------------------------------------------RGPRARGPS--QPYCZ
>uc003vim.4_loxAfr3 96 scaffold_5:86779931-86779970-
-----------------------------------------------------------------------------------RARLAS--QPYC-
>uc003vim.4_triMan1 96 JH594857:1434301-1434392+
-------------------------------------------------------------------PARR---GRGGKSGGTRARPAS--QLYCZ
>uc003vim.4_chrAsi1 96 JH823288:12840745-12841088-
MKNHTVQRYVQDQTMQDLSCSRKPVPASAMFRRCSLLPRLSVSAGMIXPP-----------------PASR---GRGGKZRRPRALLAZ--QLYCZ
>uc003vim.4_oryAfe1 96 JH864180:386270-386565-
KKNHTVQRYVQDQTMQDLSCSRKPVPASAMFRRCSLLLRLSVSAGMIHRPGGAARAAA---VRAPRKPASC---GRGGKSRRTRARPAS--QPYCS
>uc003vim.4_dasNov3 96 JH562876:4163961-4164247-
KKNHTVQRZVQDQTMQDLSCSRKPVPASAIFPRCSLLPRLSVSAGMIHRPGGAARAAAA-EARAPPEPARR---RRGGKSRG-RARSTL--WPYCZ
>uc003vim.4_monDom5 96 chr8:172488207-172488522-
MKNHTVQRZVHDHTMQDLSCSRNPGPASAMFSG--SLARLFFF-----QSRVAAVAAATATAPASPRAARR---GHDGR-QG-RAPRLT--QPGPR
>uc003vim.4_falChe1 96 KB398074:2236309-2236401-
MKNHSVQRZVQDQTIQDFSCSKKPVPASAMF-----------------------------------------------------------------
>uc003vim.4_falPer1 96 KB391107:235468-235560-
MKNHSVQRZVQDQTIQDFSCSKKPVPASAMF-----------------------------------------------------------------
>uc003vim.4_zonAlb1 96 KB913045:13169229-13169321+
MKNHSVQRZVQDQTMQDLSCSKKPVPASAMF-----------------------------------------------------------------
>uc003vim.4_geoFor1 96 JH739914:1434969-1435061-
MKNHSVQRZVQDQTMQDLSCSKKPVPASAMF-----------------------------------------------------------------
>uc003vim.4_taeGut2 96 chr1A:24297265-24297610+
MKNHSVQRZVQDQTMQDLSCSKKPVPASAMF-RRSLLPRVSARVWLA-PLSGPPLPARR---RGS--P--RR----A-------------------
>uc003vim.4_pseHum1 96 KB221193:10363665-10364044+
MKNHSVQRZVQDQTMQDLSCSKKPVPASAMFKRCSLLPRVSACVWMV-PPPGPPLPARR---PGS--P--------A------PAL----------
>uc003vim.4_melUnd1 96 JH556570:1400962-1401259-
MKNHSVQRZVQDQTMQDLSCSKNPVPASAMFRRCSLLPQLPQC--AV-RLTEAALPLP----RGS--S----------------------------
>uc003vim.4_amaVit1 96 KB264919:49-141-
MKNHRVQRZVQDQTMQDLSCSKNPVPASAMF-----------------------------------------------------------------
>uc003vim.4_araMac1 96 KE010657:8-100-
MKNHSVQRZVQDQTMQDLSCSKNPVPASAMF-----------------------------------------------------------------
>uc003vim.4_colLiv1 96 KB375394:183035-183372+
MKNQSVQRZVQDQTMQDFSCSKKPVPASAMFKRCSPLPQLSACVWMI-RL-EPAPPLP----R-P--S--------V------RPR-SLL------
>uc003vim.4_galGal4 96 chr1:24730204-24730569+
MKNHSVQRYVHDQTMQDLSCSRKPVPASAMFERRSLLPRVAARLCAG-RL---APSSRL---RAP--P--------V------RQR-PRL------
>uc003vim.4_allMis1 96 JH736630:308585-308861-
AKSQSVHGDVPDQAKHDLSCSSQPAPAPAPA--RPRPPQLP----GN-RGAGEA--------CQS--P--------G------QPP-PP-------
>uc003vim.4_cheMyd1 96 KB478633:3762431-3762611+
MKNHRVQRZVHDQTMQDLSCSRKPVPASAMFQPCSLLPQLSVCIZMI-------------------------------------------------
>uc003vim.4_chrPic1 96 JH584500:1523016-1523181-
MKNHRVQRZVHDQTMQDLSCSRKPVPASAMFQPCSLLPQLSVCIZMI-------------------------------------------------
>uc003vim.4_pelSin1 96 JH208680:6360008-6360206-
MKTHRVQRZVHDQTMQDLSCSRKPVPASAMFQPCSLLPQLSVCIZMI-CLPKQAPPAAP-------------------------------------
>uc003vim.4_apaSpi1 96 KB929668:12247128-12247327-
MKTHRVQRZVHDQTMQDLSCSRKPVPASAMFQPCSLLPQLSVCIZMI-CLPKQAPPAAP-------------------------------------
>uc003vim.4_anoCar2 96 chr5:61311416-61311667-
AKSHRAHSEGHEQAAEALSCSSKPGPASAMF----------GRVGVI-WLPERAPSPS------S--S--GP----T------EER----------
>uc003vim.4_xenTro7 96 KB021651:96809116-96809377-
KKNHTVHRYVHDQTMHDFSCSRKPAPASAMLK-CSLLPQDSVSV--AHQSPKVAHPPSD---RPTSKLNHRFQ--PG---CGLQ------------
>uc003vim.4_latCha1 96 JH126887:1184322-1184464-
TKNQTVQRZVHDQTMQDFSCSKKPVPVSAMFQ-CSLLPQLSGYSGMI-------------------------------------------------
>uc003vim.4_lepOcu1 96 chrLG8:11076026-11076166+
TKNHTVQKYVQDQTMHDFSZSKKPVPLSAMFZ--SLLPQASVYCGMI-------------------------------------------------