Other Species Alignments for knownGene uc003jdn.1
 
MAF table:

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Species selection:  + - default

  Primate  + -

chimp
gorilla
orangutan
gibbon
rhesus
crab-eating macaque
baboon
green monkey
marmoset
squirrel monkey
bushbaby

  Euarchontoglires  + -

chinese tree shrew
squirrel
lesser Egyptian jerboa
prairie vole
chinese hamster
golden hamster
mouse
rat
naked mole-rat
guinea pig
chinchilla
brush-tailed rat
rabbit
pika

  Laurasiatheria  + -

pig
alpaca
bactrian camel
dolphin
killer whale
tibetan antelope
cow
sheep
domestic goat
horse
white rhinoceros
cat
dog
ferret
panda
pacific walrus
weddell seal
black flying-fox
megabat
david's myotis (bat)
little brown bat
big brown bat
hedgehog
shrew
star-nosed mole

  Afrotheria  + -

elephant
cape elephant shrew
manatee
cape golden mole
tenrec
aardvark

  Mammal  + -

armadillo
opossum
tasmanian devil
wallaby
platypus

  Birds  + -

saker falcon
peregrine falcon
collared flycatcher
white-throated sparrow
medium ground finch
zebra finch
tibetan ground jay
budgerigar
parrot
scarlet macaw
rock pigeon
mallard duck
chicken
turkey

  Sarcopterygii  + -

american alligator
green seaturtle
painted turtle
chinese softshell turtle
spiny softshell turtle
lizard
x. tropicalis
coelacanth

  Fish  + -

tetraodon
fugu
yellowbelly pufferfish
nile tilapia
princess of Burundi
burton's mouthbreeder
zebra mbuna
pundamilia nyererei
medaka
southern platyfish
stickleback
atlantic cod
zebrafish
mexican tetra (cavefish)
spotted gar
lamprey

For information about output data format see the User's Guide
>uc003jdn.1_hg19 131 chr5:6312483-6337308-
MDGTCIERRRQWYRDDLPLCFKKEENPPSNNVDGPGGCYAKCKKKREGQMLHDLIPMGPATATSFLTEDIGLAFYQVSPLLGFLCLLSQDTWNMYTCPRWIGRSAEPPSAACQAGGTRLLGTLHSPALLSZ
>uc003jdn.1_panTro4 131 chr5:6394935-6421676-
MDGTCIERRRQWYRDDLPLCFKKEENPPSNNVDGPGGCYAKCKKRZEGQMLHDLIPMGPATATSFLTEDIGLAFYQVSPLLGFLCLLSQDTWNIYTCPRWVGRSAEPPSAACQAGGTRLLGTLHSPALLSZ
>uc003jdn.1_gorGor3 131 chr17:87723601-87751782+
MDGTCIERRRQWCRDDLPLCFKKEENPPSNNIDGPGGCYAKCKKRZEGQMLHDLIPMGPATATSFLTEDIGLTFYQVSPLLGFLCLLSQDTWNIYTCPRWVGRSAEPPSAACQAGGTRLLGTLHSPALLSZ
>uc003jdn.1_ponAbe2 131 chr5:6417136-6441001-
TDGACTQRRRQWYHDDLPPCFKKEENPPSNNVDGPGGCYAKCKKRQEGQMLHDLIPMGSATATSFLTEDIGLAFYQVSPILGFLCLLSQDTQNMCTZPRWAGRSAKPPSAACHA---HLLGTLHSPALLSZ
>uc003jdn.1_nomLeu3 131 chr6:5816035-5840139-
MDGACTERRRQWYRDDLPLCFKKEENPPSNNVDGPGGCYAECKKRQEGQMLHDLIPMGPATATSFLTEDIGLAFYQVSPLLGFLCLLSQDTWNMCTCPRWAGRSAEPPSAACQAGGTRPLGTLHSPALLSZ
>uc003jdn.1_rheMac3 131 chr6:6241455-6268243-
MDGACTQRRWQWYHDDLPLCFKKEEDPSSNSVESPGGCYAKCKKRQEGQMLHDLIPMDPATATSFLTEGIGLDFYQVSLLLGFLCLLSQDTRNMCTCPRCAGRSAEPPSAA--AGETCLLGTLDSPALLSZ
>uc003jdn.1_macFas5 131 chr6:6309624-6340333-
MDGACTQRRWQWYHDDLPLCFKKEEDPSSNSVDSPGGCYAKCKKRQEGQMLHDLIPMDPATATSFLTEGIGLDFYQVSLPLGFLCLLSQDTRNMCTCPRCAGRSAEPPSAA--AGETCLLGTLDSPALLSZ
>uc003jdn.1_papHam1 131 scaffold11881:2126-29241-
MDGACTQRRWQWYHDDLPLCFKKEEDPSSNNVDGPGGCYAKCKKRQEGQMLHDLIPMDPATATSFLTEGIGLDFYQVSLLLGFLCLLSQDTRNMCTCPRCASRSAEPPSAAC-AGETCLLGTLHSPALLSZ
>uc003jdn.1_chlSab1 131 chr4:5993760-6021224-
MDGACTQRRWQWYHDDLPLCFKKEEDPSSNNVDGPGGYYAKCKKRQEGQMLHDLIPMDPATATSFLTEGIGLDFYQVSLLLGFLCLLSQNTRNMCTCPRCAGRSAEPPSAAC-AGETCLLGTLHSPALLSZ
>uc003jdn.1_calJac3 131 chr2:197913004-197939876+
T-GACTQRRRPRYHDDLSLCFKKEENPPSNKVDGPGGRYAECRKRQEVQMLHDLIHMGPATATSFLTEDIGLA-YQFP------CLLSQETQNMCMDPRCAGCSAEPPSATCGAGGTCLLGTLRSPALLSZ
>uc003jdn.1_saiBol1 131 JH378155:10313898-10340745+
TDGACTQRRRPRYHGDLSLCFKKEEKPPSNNVDRPGGCYAECKKRQEVZMLHDRIHMGLAAATSLLTEDIGLA-YQFT------CLLSQDTQNMCTGPRCAGRSAEPPSAACGAGRTCLLGTLGSPALLSZ
>uc003jdn.1_otoGar3 131 GL873707:2325290-2325541-
----------------PPLSLEKEGTPPFKNVGEPGGRCAWZGERQEGHTL--LTRMESKMATSF------------SP---LSWM---ETRA-----GYAGG---P-----------FLGILDSLTFHGQ
>uc003jdn.1_tupChi1 131 KB370504:137532-137879+
----------------LPLGLRKENNTACSERHGPGGEHA-CKQT-VGQ-LLDV---GPEASRSSPRADL-SPSTHTLCFLGLHCLLC-VLWNMV-WPGPARGSAEASCAGRWAGRSHFPGTRGSPAPLSW
>uc003jdn.1_speTri2 131 JH393444:1011044-1032223+
EEGTSTQSRWZQPPD---HPF---A--HCDKV-EPE--CAE-ERPRRT--PQ--QWVGSEAALPFLRAGVGLAVHQALPFLG-VHLLAPNVWMMVPGLGHSSVSTE---AVCWTSWASVLGVL-PPALPSZ
>uc003jdn.1_jacJac1 131 JH725524:547418-547660+
------------------------------------------------------SGMESEMSI-FL-AGSGLDFCPVSLLLG-FGLPLPDAQEMAAGLD-S--PSQSFRLVCWLGRAAFARGED--SLCSZ
>uc003jdn.1_micOch1 131 chr19:49085835-49108945+
NMGTSTGN-----RGDLAZTIKNKTNP-HD----ATG-CVKREEPQKD-LLL--LZVNSDLLKR-L-TALGLSFCQLSTLLR------------------------------------------LPALCCL
>uc003jdn.1_criGri1 131 KE381944:188495-210538-
KAGTCTGK-----HGDLAZAIENKTNP-------PGG-GTKTEKPRKD-VLL--LZANSGILKLFLITAISLGCCQVSPLLR-CCLLPEDALEMVTGPECSTGVAEPLPSVFWAKRASVREGAHPPAPCTZ
>uc003jdn.1_mesAur1 131 KB708129:39019484-39045379-
KAGNCTGK-----HGDLTZTIENKTNP-LG---NPGG-CAKREKPHKD-VLL--LWVNSGVLKLFLSTAIGLGFCQVSHLLR-FCLLPEDALEVVTGLECSTGVAEPSPAVFWAKZASFWEGAHPLARCTZ
>uc003jdn.1_mm10 131 chr13:69867285-69867646+
----------------LACT-GWGTNPYHD---EPQG-SAQZGEPQED-ALL--PSVNSDMLGPFL-AGVGL-FCQVSPRLG-CGLFPEDALGMVTGLECSTDVAELSTAVFZAERVSVCGEVEPPAPCLZ
>uc003jdn.1_rn5 131 chr1:37454443-37454804-
----------------LACTLGWGTNTHHD---ESQ--CAKZGKPQKD-MLL--LZVN-DMLEPFS-AGVGLGFCQVSPCLA-CCLLPEDALRMVIDZKCSAGVTELSTALFZA-RASVYGEPGLPAPCLC
>uc003jdn.1_hetGla2 131 JH602064:4086056-4086382-
----------------SPHLPD----T-SNSL-DPGE-H-GZHEGHR----Q--TCMDSELATSCLSVDAD--VWQASPLLG-PHWLPPDAW-ALIAS-CSG-LAGPPRPVCWSGWTFIFRGCCVLALQSZ
>uc003jdn.1_cavPor3 131 scaffold_144:1964172-1964516-
----------------ASHSSENKGSA-CDTL-GPGG-HAGRHEGYGD-VLQ--TCVASELATVC-SAGTDLVVSKV-PVLG-PHWLLLDAWARLTVP-CSG-LAGPLTP---SAW-LVCRGYLVPALQSZ
>uc003jdn.1_chiLan1 131 JH721964:4145432-4166941-
TAGTCAQRGGRKERDAPPHGPENEGST-GDTL-DPGG-RAGZHEGCSD-APQ--TCMDSELA--RLSVDADLVVQQALPLLG-PNQLLPEAWAELT----SG-LAGPLRPIFWSGW-FVFRRCLVPVLQGZ
>uc003jdn.1_octDeg1 131 JH651523:22936374-22936718-
----------------PPPSPENEGRM-ZDMP-DPGG-CAGRHEGCRD-TPQ--TYVDSELASVCWSVDADLIVQQV--LLG-PHPLPSDARVELLIA-CSG-LVGP-RPVCGSGW-SVFRCYLVSVLQSW
>uc003jdn.1_oryCun2 131 chrUn0058:167391-167666-
----------------PPLSHE---NP------IS---------LRGG--PE--TSVGSKV----EGGDAGPALS--APLLG--ALSPPPMANICIGPGHPAGLAGP------VRGSSG-----PPAPPCZ
>uc003jdn.1_ochPri3 131 JH802164:882742-883221+
----------------PAPTHGTPRSPPCINLASPGS-NSW-GEPRRG--LQ--IZVGPKVAP-RGEGWTGLAFSQMTPLLG--VLLPPGLVDVCLDLGHP---AG--------SGAS---------PPWZ
>uc003jdn.1_susScr3 131 chr16:81937935-81938153+
-----------------------------------------------------LGPV-P--ATS--VQDDGCA-CQPPSLPG---QPPPDSWQPI-CLG----TAELP-AAGWAGCTZVLGK--PPALHNR
>uc003jdn.1_vicPac2 131 KB632444:4330049-4352701-
Q-RATSVRRRZRRCD---------------------------------------------------MEDSGLPSCQSSS--G---LPPSDSWDPFACPG----TAKPP-AADRAGWPZVLGE---SALHKW
>uc003jdn.1_camFer1 131 KB019481:263024-284182-
Q-RVTSVRRRZWRCD---------------------------------------------------MEDSGLPSCQSSS--G---LPPSDLWDTFACPG----TAKPP-AADRTGWPZVLGE---S-----
>uc003jdn.1_turTru2 131 JH474095:187269-209541+
QWRETSVRRRWZCCD---------------------------------------------------MENNGLASCQPSSL-G---LSPPDSWDPNTCWZ----TAELP-AASRAGWTZVLGN--SPALHRZ
>uc003jdn.1_orcOrc1 131 KB316903:10262555-10284032+
QWRETSVRRRZZCCD---------------------------------------------------MENNGLASCQPSSL-G---LSPPDSWDPNTCWZ----TAELP-AASRAGWTZVLGN--SPALHRZ
>uc003jdn.1_panHod1 131 KE111863:211016-234108-
ZSG-----------D----------------------------------------------ATSL--EVSDLDSCQPVAQ-G---LPSLGSWDPITCLG----TASLP-AASWAGZT-VLGK---PAPHPS
>uc003jdn.1_bosTau7 131 chrUn_JH126097:2369-25505-
RAGGASVRRRCZPRD---------------------------------------------------MGVSDLDSCQPVAQ-G---LPFLGSWDPITCLG----TASLS-AACWASZT-VLGK---PAPHSL
>uc003jdn.1_oviAri3 131 chr16:66713652-66736875+
RSG-----------D----------------------------------------------------EVSDLDPCQPVAQ-G---LPSLGSWDPITCLG----TASLP-AASWAGZT-VLGE---PAPHPS
>uc003jdn.1_capHir1 131 chr20:66244449-66267941+
RSG-----------D-------------------------------------------P--ATSL--EVSDLDSCQPVAZ-G---LPSLGSWDPITCLG----TASLP-AASWAGZT-VLGE---PAPHPS
>uc003jdn.1_equCab2 131 chr21:52631240-52652567+
SDRVTSGGRVZLHPD---------------------------------------------------EEANGLASYQPSPLLG---LLPPDAQDPFTCPG----AAEPSHAASCAGCTCVLGM--SPAPHNZ
>uc003jdn.1_cerSim1 131 JH767810:5323916-5345397-
PERETSRRRZZZHPD---------------------------------------------------MEADGLASCYCSPLLG---LLPPDASDPFSCPG----SAEPSHSAGWAGWTCVLGI--SPAPHDZ
>uc003jdn.1_felCat5 131 chrA1:234621243-234643202+
RERES--RRQRZHRD--------------------------------------------------LIGDSGLASRPP-PLPG---LL-SDPQVLFTCRG----SAKPPHAASWA-WPCDLGV--SPALHTR
>uc003jdn.1_canFam3 131 chr34:7370657-7391459+
RERES--SRZZZHLD--------------------------------------------------LFEDSGLASCQLSCLLG---LL-LDSWI-LICL-----SAKPSRAASWA--PWVLGI--SPALPNZ
>uc003jdn.1_musFur1 131 GL897032:1799482-1799664+
------------------------------------------------------------------IEDSGLVSCQLPPFLG---LLPLHAWVPFTCLG----SAKPSLAASWA----VLGI--TPALPHC
>uc003jdn.1_ailMel1 131 GL193676.1:342987-362878-
RERES--RRQZZHRV----------------------------------------------APSFLIEYSGLTSCQI-PLLE---LLPLDTWVSFICLG----SAKSSLAASWAGWTCVVGL--SPALPNZ
>uc003jdn.1_odoRosDiv1 131 KB230100:159162-159216-
REGES--GRRZKHHD--------------------------------------------------------------------------------------------------------------------
>uc003jdn.1_lepWed1 131 KB716280:349549-349775-
--------------------------------------------------------------PPLLIEDSGLVSCZLPPRQG---LLPVDALVPFTRLG----SAKPSLAASWAGWPCILGI--SPALPNZ
>uc003jdn.1_pteAle1 131 KB030913:1426271-1444981+
AEGVTS-ZRWRZPCG-----------------------------------------------TSFSTEDNA--------------------------------------PVSRASWTRVL-A--TPALHDZ
>uc003jdn.1_pteVam1 131 scaffold_11343:26272-44886+
AEGVTS-ZRWRZPCG-----------------------------------------------TSFSTEDNA--------------------------------------PVSRASWTRVL-A--TPALHDZ
>uc003jdn.1_myoDav1 131 KB106364:11544839-11566041-
AEGICTEZLWZZPCD----------------------------------------------ATAFZTKDNGLASCQPSHLLG---LL-PDSWA-FTCPG----PAEPPHAANCASZTCVLDV--FTALHNZ
>uc003jdn.1_myoLuc2 131 GL429767:52482539-52503417-
AEGICTEZLWZZPCD-----------------------------------------------TAFZTKDNGLASCQPSHLLG---LL-PDSWA-FTCLG----PAEPPHAASCASWTCVLCI--FTALHNZ
>uc003jdn.1_eptFus1 131 JH977616:8584052-8605198+
AEGVCTEZLWZEPCD----------------------------------------------ATSFZTKDN-----QLSHLLG---LL-PDSWA-FTCPG----PAEPPHASSCAAWTCDLSI--FTALHNZ
>uc003jdn.1_loxAfr3 131 scaffold_7:4599685-4599899+
-------------------------------------------------------------AAIL-IEEDGLAFCPANPLLG---LLYPDLW-VFTCLKCYLPR-ZPS-AAFEIAGFCMW-T--TPGHHDZ
>uc003jdn.1_triMan1 131 JH594678:5298554-5298770+
-------------------------------------------------------------ATTV-IEEESLGFCLTHPVLG---LLYPDSRNVFTRLQCYLPZAEPS-AACKISGSCMRET--SPGRKDZ
>uc003jdn.1_chrAsi1 131 JH823563:2428446-2428661-
-------------------------------------------------------------ATAL-IEEGDLAFQPTHPLLR---LLCASLCNA-MWLRCSLAGVEPS-DTRDIA---MLET--ILVHPDZ
>uc003jdn.1_oryAfe1 131 JH864099:2754196-2754418-
-----------------------------------------------------------A-TTAV-VEEDGLAFSPTPPLPG---LLCLGLWDVRTCLKCCVLZTEPS-AACEVTASCML-V--TPVHHDZ
>uc003jdn.1_dasNov3 131 JH581248:36664-36872-
-------------------------------------------------------------AT-L-AWGZRPARSQTAPVSE---LLSL-SRNTFTYPKC-QLZAESS-AAPQ-----SWGA--TPLS---
>uc003jdn.1_taeGut2 131 chr5:61954062-61954290+
--------------------------------------------------LH-FCPK--I-AAS--A--IPLASSPGSPLLE-------------PCPZZAKWRVZCS-AA--AI-TRVLGS--TPSPZRZ