Rat Gene Pabpn1l (RGD:1562761) Description and Page Index
  Description: No description available
Transcript (Including UTRs)
   Position: rn4 chr19:52,898,178-52,901,622 Size: 3,445 Total Exon Count: 7 Strand: -
Coding Region
   Position: rn4 chr19:52,898,456-52,901,579 Size: 3,124 Coding Exon Count: 7 

Page IndexSequence and LinksRGD Gene DataUniProtKB CommentsCTDMicroarray Expression
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated: 2011-12-07

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:52,898,178-52,901,622)mRNAProtein (269 aa)
Gene SorterOther Species FASTAEnsemblEntrez GeneGeneNetworkPubMed
RGDStanford SOURCEUniProtKB

-  Additional Data from RGD
  RGD Gene: 1562761
Gene Symbol: Pabpn1l
Name: poly(A)binding protein nuclear 1-like
Curated Pubmed Papers: 12477932, 15489334
Entrez Gene: 307920
UniProt: B0BNE4
GenBank Nucleotide: BC158789, CH473972, NM_001113779
Genebank Protein: NP_001107251.1, AAI58790, B0BNE4, EDL92764, NP_001107251
UniGene: 154587
Ensembl Gene: ENSRNOG00000029558, ENSRNOG00000029558
IMAGE CLONE: 7306904
MGC: BC158789

-  Comments and Description Text from UniProtKB
  ID: EPAB2_RAT
DESCRIPTION: RecName: Full=Embryonic polyadenylate-binding protein 2; Short=Embryonic poly(A)-binding protein 2; Short=ePABP-2; Short=ePABP2; AltName: Full=Embryonic poly(A)-binding protein type II; AltName: Full=Poly(A)-binding protein nuclear-like 1;
FUNCTION: Binds the poly(A) tail of mRNA (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
 
Expression ratio colors:

Affymetrix All Exon Microarrays

           
Ratios

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom

Pfam Domains:
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

ModBase Predicted Comparative 3D Structure on B0BNE4
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanMouseZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
  EnsemblFlyBaseWormBaseSGD
  Protein SequenceProtein SequenceProtein SequenceProtein Sequence
  AlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0003723 RNA binding

Cellular Component:
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC158789 - Rattus norvegicus poly(A)binding protein nuclear-like 1, mRNA (cDNA clone MGC:188155 IMAGE:7306904), complete cds.

-  Other Names for This Gene
  Symbol: Epabp2, LOC307920, Pabpn1l, Pabpnl1, RGD1562761, RGD1562761_predicted, rgd1562761_predicted
Name: Embryonic poly(A)-binding protein 2, Embryonic poly(A)-binding protein type II, Embryonic polyadenylate-binding protein 2, ePABP-2, embryonic polyadenylate-binding protein 2, poly(A)binding protein nuclear-like 1, similar to embryonic pol(yA) binding protein 2, similar to embryonic pol(yA) binding protein 2 (predicted), similar to embryonic pol(ya) binding protein 2 (predicted)
RefSeq Accession: NM_001113779
Protein: B0BNE4 (aka EPAB2_RAT)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.