Mouse Gene Tmem233 (ENSMUST00000111997.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus transmembrane protein 233 (Tmem233), mRNA. (from RefSeq NM_001101546)
Gencode Transcript: ENSMUST00000111997.1
Gencode Gene: ENSMUSG00000079278.1
Transcript (Including UTRs)
   Position: mm10 chr5:116,038,755-116,083,244 Size: 44,490 Total Exon Count: 3 Strand: -
Coding Region
   Position: mm10 chr5:116,040,765-116,083,185 Size: 42,421 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersRNA StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:116,038,755-116,083,244)mRNA (may differ from genome)Protein (135 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsPubMedSOURCE
UniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.3059-0.208 Picture PostScript Text
3' UTR -631.402010-0.314 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBank Ensembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  LF195126 - JP 2014500723-A/2629: Polycomb-Associated Non-Coding RNAs.
AK047066 - Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930015L22 product:unclassifiable, full insert sequence.
LF279158 - JP 2014500723-A/86661: Polycomb-Associated Non-Coding RNAs.
LF279159 - JP 2014500723-A/86662: Polycomb-Associated Non-Coding RNAs.
MA430703 - JP 2018138019-A/2629: Polycomb-Associated Non-Coding RNAs.
MA514735 - JP 2018138019-A/86661: Polycomb-Associated Non-Coding RNAs.
MA514736 - JP 2018138019-A/86662: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0A0MQE1, NM_001101546, uc012ecg.1, uc012ecg.2, uc012ecg.3
UCSC ID: uc012ecg.3
RefSeq Accession: NM_001101546
CCDS: CCDS51629.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.