Mouse Gene Snx20 (ENSMUST00000034087.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus sorting nexin 20 (Snx20), mRNA. (from RefSeq NM_027840)
Gencode Transcript: ENSMUST00000034087.8
Gencode Gene: ENSMUSG00000031662.8
Transcript (Including UTRs)
Position: mm10 chr8:88,626,563-88,636,128 Size: 9,566 Total Exon Count: 4 Strand: -
Coding Region
Position: mm10 chr8:88,627,159-88,631,889 Size: 4,731 Coding Exon Count: 3
Data last updated at UCSC: 2019-09-20
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
LF197122 - JP 2014500723-A/4625: Polycomb-Associated Non-Coding RNAs.AK157884 - Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930003L11 product:Sorting nexin 20, full insert sequence.AK042068 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630055K15 product:9130017C17RIK PROTEIN (SNX20) homolog [Mus musculus], full insert sequence.BC039809 - Mus musculus sorting nexin 20, mRNA (cDNA clone MGC:48241 IMAGE:2938247), complete cds.AK157032 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830113J12 product:Sorting nexin 20, full insert sequence.AK018632 - Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130017C17 product:hypothetical PX (Bem1/NCF1/PI3K) domain containing protein, full insert sequence.LF301549 - JP 2014500723-A/109052: Polycomb-Associated Non-Coding RNAs.AF395844 - Mus musculus SNX20 (Snx20) mRNA, complete cds.AK170109 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630017K13 product:hypothetical protein, full insert sequence.MA432699 - JP 2018138019-A/4625: Polycomb-Associated Non-Coding RNAs.MA537126 - JP 2018138019-A/109052: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: A0A0R4J0D0, NM_027840, uc009mrp.1, uc009mrp.2UCSC ID: uc009mrp.2RefSeq Accession: NM_027840
CCDS: CCDS22512.1
Gene Model Information
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for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.