Mouse Gene Ino80b (ENSMUST00000032109.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus INO80 complex subunit B (Ino80b), mRNA. (from RefSeq NM_023547)
Gencode Transcript: ENSMUST00000032109.4
Gencode Gene: ENSMUSG00000030034.11
Transcript (Including UTRs)
   Position: mm10 chr6:83,121,828-83,125,029 Size: 3,202 Total Exon Count: 5 Strand: -
Coding Region
   Position: mm10 chr6:83,121,828-83,125,029 Size: 3,202 Coding Exon Count: 5 

Page IndexSequence and LinksPrimersCTDOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:83,121,828-83,125,029)mRNA (may differ from genome)Protein (345 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsPubMedSOURCE
UniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBank     
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  LF195618 - JP 2014500723-A/3121: Polycomb-Associated Non-Coding RNAs.
BC047990 - Mus musculus INO80 complex subunit B, mRNA (cDNA clone IMAGE:6509498), partial cds.
BC058788 - Mus musculus INO80 complex subunit B, mRNA (cDNA clone MGC:65219 IMAGE:6440887), complete cds.
BC019383 - Mus musculus INO80 complex subunit B, mRNA (cDNA clone MGC:30535 IMAGE:5010975), complete cds.
AK010946 - Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510009I23 product:PAPA-1, full insert sequence.
AK189382 - Mus musculus cDNA, clone:Y0G0148P15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032109, based on BLAT search.
LF195620 - JP 2014500723-A/3123: Polycomb-Associated Non-Coding RNAs.
LF285227 - JP 2014500723-A/92730: Polycomb-Associated Non-Coding RNAs.
MA431195 - JP 2018138019-A/3121: Polycomb-Associated Non-Coding RNAs.
MA431197 - JP 2018138019-A/3123: Polycomb-Associated Non-Coding RNAs.
MA520804 - JP 2018138019-A/92730: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J0C7, NM_023547, uc009cmr.1
UCSC ID: uc009cmr.1
RefSeq Accession: NM_023547
CCDS: CCDS39530.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.