Mouse Gene Aimp1 (ENSMUST00000029663.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 (Aimp1), transcript variant 1, mRNA. (from RefSeq NM_007926)
Gencode Transcript: ENSMUST00000029663.10
Gencode Gene: ENSMUSG00000028029.11
Transcript (Including UTRs)
   Position: mm10 chr3:132,660,499-132,683,884 Size: 23,386 Total Exon Count: 7 Strand: -
Coding Region
   Position: mm10 chr3:132,660,575-132,683,794 Size: 23,220 Coding Exon Count: 7 

Page IndexSequence and LinksPrimersCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:132,660,499-132,683,884)mRNA (may differ from genome)Protein (319 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.9090-0.366 Picture PostScript Text
3' UTR -8.9076-0.117 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012340 - NA-bd_OB-fold
IPR016027 - NA-bd_OB-fold-like
IPR002547 - tRNA-bd_dom

Pfam Domains:
PF01588 - Putative tRNA binding domain

SCOP Domains:
47661 - t-snare proteins
50249 - Nucleic acid-binding proteins

ModBase Predicted Comparative 3D Structure on Q3UZG4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGDEnsembl   
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0042803 protein homodimerization activity
GO:0051020 GTPase binding

Biological Process:
GO:0001937 negative regulation of endothelial cell proliferation
GO:0007267 cell-cell signaling
GO:0048514 blood vessel morphogenesis
GO:0050900 leukocyte migration
GO:0051607 defense response to virus

Cellular Component:
GO:0005829 cytosol
GO:0009986 cell surface
GO:0017101 aminoacyl-tRNA synthetase multienzyme complex


-  Descriptions from all associated GenBank mRNAs
  BC002054 - Mus musculus small inducible cytokine subfamily E, member 1, mRNA (cDNA clone MGC:6083 IMAGE:3496254), complete cds.
U10118 - Mus musculus endothelial-monocyte activating polypeptide II mRNA, complete cds.
AK133859 - Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730457G12 product:small inducible cytokine subfamily E, member 1, full insert sequence.
AK087932 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001B22 product:endothelial monocyte activating polypeptide 2, full insert sequence.
AK160506 - Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310022M24 product:small inducible cytokine subfamily E, member 1, full insert sequence.
AK036573 - Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830137A06 product:unclassifiable, full insert sequence.
AK050571 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920001K17 product:unclassifiable, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_007926, Q3UZG4, Q3UZG4_MOUSE, Scye1, uc008rjx.1, uc008rjx.2
UCSC ID: uc008rjx.2
RefSeq Accession: NM_007926
Protein: Q3UZG4 CCDS: CCDS38642.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.