Mouse Gene Cdc6 (ENSMUST00000093937.2) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus cell division cycle 6 (Cdc6), transcript variant 1, mRNA. (from RefSeq NM_011799)
Gencode Transcript: ENSMUST00000093937.2
Gencode Gene: ENSMUSG00000017499.15
Transcript (Including UTRs)
   Position: mm10 chr11:98,908,151-98,921,893 Size: 13,743 Total Exon Count: 12 Strand: +
Coding Region
   Position: mm10 chr11:98,908,252-98,921,205 Size: 12,954 Coding Exon Count: 12 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:98,908,151-98,921,893)mRNA (may differ from genome)Protein (589 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsPubMed
SOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D000082 Acetaminophen
  • D001564 Benzo(a)pyrene
  • D004958 Estradiol
  • D005472 Fluorouracil
  • D013749 Tetrachlorodibenzodioxin
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C010914 2,4-diaminotoluene
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • C093973 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.90101-0.247 Picture PostScript Text
3' UTR -196.00688-0.285 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details    Gene Details
Gene Sorter    Gene Sorter
GenBankRGDEnsembl WormBaseSGD
Protein SequenceProtein Sequence  Protein Sequence 
AlignmentAlignment  Alignment 

-  Descriptions from all associated GenBank mRNAs
  LF198860 - JP 2014500723-A/6363: Polycomb-Associated Non-Coding RNAs.
AK166003 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730029A08 product:cell division cycle 6 homolog (S. cerevisiae), full insert sequence.
AK162669 - Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830165N12 product:cell division cycle 6 homolog (S. cerevisiae), full insert sequence.
AK075975 - Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510042M04 product:cell division cycle 6 homolog (S. cerevisiae), full insert sequence.
AK085020 - Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430025E24 product:cell division cycle 6 homolog (S. cerevisiae), full insert sequence.
AK012192 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610529I24 product:cell division cycle 6 homolog (S. cerevisiae), full insert sequence.
BC052434 - Mus musculus cell division cycle 6 homolog (S. cerevisiae), mRNA (cDNA clone MGC:63392 IMAGE:6837113), complete cds.
AJ009559 - Mus musculus mRNA for CDC6 protein.
AJ223087 - Mus musculus mRNA for Cdc6-related protein.
LF203920 - JP 2014500723-A/11423: Polycomb-Associated Non-Coding RNAs.
LF230403 - JP 2014500723-A/37906: Polycomb-Associated Non-Coding RNAs.
LF310552 - JP 2014500723-A/118055: Polycomb-Associated Non-Coding RNAs.
LF230406 - JP 2014500723-A/37909: Polycomb-Associated Non-Coding RNAs.
LF230407 - JP 2014500723-A/37910: Polycomb-Associated Non-Coding RNAs.
LF230412 - JP 2014500723-A/37915: Polycomb-Associated Non-Coding RNAs.
LF230413 - JP 2014500723-A/37916: Polycomb-Associated Non-Coding RNAs.
LF230414 - JP 2014500723-A/37917: Polycomb-Associated Non-Coding RNAs.
LF230415 - JP 2014500723-A/37918: Polycomb-Associated Non-Coding RNAs.
LF310550 - JP 2014500723-A/118053: Polycomb-Associated Non-Coding RNAs.
MA434437 - JP 2018138019-A/6363: Polycomb-Associated Non-Coding RNAs.
MA439497 - JP 2018138019-A/11423: Polycomb-Associated Non-Coding RNAs.
MA546129 - JP 2018138019-A/118055: Polycomb-Associated Non-Coding RNAs.
MA546127 - JP 2018138019-A/118053: Polycomb-Associated Non-Coding RNAs.
MA465980 - JP 2018138019-A/37906: Polycomb-Associated Non-Coding RNAs.
MA465983 - JP 2018138019-A/37909: Polycomb-Associated Non-Coding RNAs.
MA465984 - JP 2018138019-A/37910: Polycomb-Associated Non-Coding RNAs.
MA465989 - JP 2018138019-A/37915: Polycomb-Associated Non-Coding RNAs.
MA465990 - JP 2018138019-A/37916: Polycomb-Associated Non-Coding RNAs.
MA465991 - JP 2018138019-A/37917: Polycomb-Associated Non-Coding RNAs.
MA465992 - JP 2018138019-A/37918: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04110 - Cell cycle

BioCarta from NCI Cancer Genome Anatomy Project
m_mcmPathway - CDK Regulation of DNA Replication

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J145, NM_011799, uc007lhw.1, uc007lhw.2
UCSC ID: uc007lhw.2
RefSeq Accession: NM_011799
CCDS: CCDS25368.1, CCDS25367.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.