Mouse Gene Cct4 (ENSMUST00000173867.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus chaperonin containing Tcp1, subunit 4 (delta) (Cct4), mRNA. (from RefSeq NM_009837)
Gencode Transcript: ENSMUST00000173867.7
Gencode Gene: ENSMUSG00000007739.10
Transcript (Including UTRs)
Position: mm10 chr11:22,990,519-23,003,780 Size: 13,262 Total Exon Count: 14 Strand: +
Coding Region
Position: mm10 chr11:22,990,754-23,003,151 Size: 12,398 Coding Exon Count: 14
Data last updated at UCSC: 2019-09-20
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Q564F4_MOUSE
DESCRIPTION: RecName: Full=T-complex protein 1 subunit delta;
SIMILARITY: Belongs to the TCP-1 chaperonin family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR012717 - Chap_CCT_delta
IPR017998 - Chaperone_TCP-1
IPR002194 - Chaperonin_TCP-1_CS
IPR002423 - Cpn60/TCP-1
Pfam Domains: PF00118 - TCP-1/cpn60 chaperonin family
SCOP Domains: 48592 - GroEL equatorial domain-like
52029 - GroEL apical domain-like
54849 - GroEL-intermediate domain like
ModBase Predicted Comparative 3D Structure on Q564F4
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
Z31554 - M.musculus (129/Sv) Cctd mRNA for CCT (chaperonin containing TCP-1) delta subunit.AK146242 - Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730039L03 product:chaperonin subunit 4 (delta), full insert sequence.AK010634 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410038N06 product:chaperonin subunit 4 (delta), full insert sequence.AK152665 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830082B11 product:chaperonin subunit 4 (delta), full insert sequence.AK165229 - Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F420013F22 product:chaperonin subunit 4 (delta), full insert sequence.AK167026 - Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0028D03 product:chaperonin subunit 4 (delta), full insert sequence.BC054773 - Mus musculus chaperonin containing Tcp1, subunit 4 (delta), mRNA (cDNA clone MGC:65609 IMAGE:6807250), complete cds.AK163369 - Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020023P15 product:chaperonin subunit 4 (delta), full insert sequence.AK150601 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830012K01 product:chaperonin subunit 4 (delta), full insert sequence.AK152173 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830053H18 product:chaperonin subunit 4 (delta), full insert sequence.AK169339 - Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920187K10 product:chaperonin subunit 4 (delta), full insert sequence.AK167657 - Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530027F15 product:chaperonin subunit 4 (delta), full insert sequence.AK167846 - Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730032I04 product:chaperonin subunit 4 (delta), full insert sequence.AK167262 - Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0047K05 product:chaperonin subunit 4 (delta), full insert sequence.L25913 - Mus musculus chaperonin mRNA, complete cds.AK200879 - Mus musculus cDNA, clone:Y1G0136E12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK206188 - Mus musculus cDNA, clone:Y2G0104A15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK208716 - Mus musculus cDNA, clone:Y2G0112I07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK215884 - Mus musculus cDNA, clone:Y2G0136H20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK219961 - Mus musculus cDNA, clone:Y2G0150E14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK213770 - Mus musculus cDNA, clone:Y2G0129G18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK219702 - Mus musculus cDNA, clone:Y2G0149F06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK207154 - Mus musculus cDNA, clone:Y2G0107B17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK207215 - Mus musculus cDNA, clone:Y2G0107E22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK213345 - Mus musculus cDNA, clone:Y2G0128A22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK088703 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430024B07 product:chaperonin subunit 4 (delta), full insert sequence.AK214188 - Mus musculus cDNA, clone:Y2G0130P14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK194972 - Mus musculus cDNA, clone:Y1G0116P18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020562, based on BLAT search.AK014251 - Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110073C03 product:unclassifiable, full insert sequence.
Biochemical and Signaling Pathways
Other Names for This Gene
Alternate Gene Symbols: mCG_8764, NM_009837, Q564F4, Q564F4_MOUSE, RP24-143D17.2-001, uc007ieo.1, uc007ieo.2UCSC ID: uc007ieo.2RefSeq Accession: NM_009837
Protein: Q564F4
CCDS: CCDS24474.1
Gene Model Information
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for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.