Mouse Gene Ccnyl1 (ENSMUST00000114077.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Belongs to the cyclin family. (from UniProt D3YUJ3)
Gencode Transcript: ENSMUST00000114077.7
Gencode Gene: ENSMUSG00000070871.10
Transcript (Including UTRs)
   Position: mm10 chr1:64,690,455-64,725,644 Size: 35,190 Total Exon Count: 11 Strand: +
Coding Region
   Position: mm10 chr1:64,690,627-64,723,639 Size: 33,013 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:64,690,455-64,725,644)mRNA (may differ from genome)Protein (367 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGeneCardsMGIPubMedSOURCE
UniProtKB

-  Comments and Description Text from UniProtKB
  ID: D3YUJ3_MOUSE
DESCRIPTION: SubName: Full=Protein Ccnyl1;
SIMILARITY: Belongs to the cyclin family.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -59.80172-0.348 Picture PostScript Text
3' UTR -572.102005-0.285 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013763 - Cyclin-like
IPR006671 - Cyclin_N
IPR012399 - Cyclin_Y

Pfam Domains:
PF00134 - Cyclin, N-terminal domain
PF08613 - Cyclin

SCOP Domains:
47954 - Cyclin-like

ModBase Predicted Comparative 3D Structure on D3YUJ3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGDEnsembl   
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019901 protein kinase binding

Biological Process:
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0001932 regulation of protein phosphorylation
GO:0007283 spermatogenesis
GO:0030317 flagellated sperm motility
GO:0045859 regulation of protein kinase activity

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  LF192691 - JP 2014500723-A/194: Polycomb-Associated Non-Coding RNAs.
AK132782 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922505P10 product:similar to Cyclin fold protein 1 variant b [Homo sapiens], full insert sequence.
LF216042 - JP 2014500723-A/23545: Polycomb-Associated Non-Coding RNAs.
LF216055 - JP 2014500723-A/23558: Polycomb-Associated Non-Coding RNAs.
AK079350 - Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630037P07 product:unclassifiable, full insert sequence.
DQ705036 - Mus musculus piRNA piR-120358, complete sequence.
LF216056 - JP 2014500723-A/23559: Polycomb-Associated Non-Coding RNAs.
LF216057 - JP 2014500723-A/23560: Polycomb-Associated Non-Coding RNAs.
MA428268 - JP 2018138019-A/194: Polycomb-Associated Non-Coding RNAs.
MA451619 - JP 2018138019-A/23545: Polycomb-Associated Non-Coding RNAs.
MA451632 - JP 2018138019-A/23558: Polycomb-Associated Non-Coding RNAs.
MA451633 - JP 2018138019-A/23559: Polycomb-Associated Non-Coding RNAs.
MA451634 - JP 2018138019-A/23560: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK132782, D3YUJ3, D3YUJ3_MOUSE, uc007bgx.1, uc007bgx.2, uc007bgx.3
UCSC ID: uc007bgx.3
RefSeq Accession: NM_001097644
Protein: D3YUJ3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.