Mouse Gene Wls (ENSMUST00000198878.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus wntless WNT ligand secretion mediator (Wls), transcript variant 3, mRNA. (from RefSeq NM_001356350)
Gencode Transcript: ENSMUST00000198878.1
Gencode Gene: ENSMUSG00000028173.10
Transcript (Including UTRs)
   Position: mm10 chr3:159,839,737-159,938,664 Size: 98,928 Total Exon Count: 13 Strand: +
Coding Region
   Position: mm10 chr3:159,839,942-159,934,360 Size: 94,419 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:159,839,737-159,938,664)mRNA (may differ from genome)Protein (541 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: WLS_MOUSE
DESCRIPTION: RecName: Full=Protein wntless homolog; AltName: Full=Integral membrane protein GPR177; AltName: Full=Protein evenness interrupted homolog; Short=EVI; Flags: Precursor;
FUNCTION: Regulates Wnt proteins sorting and secretion in a feedback regulatory mechanism. This reciprocal interaction plays a key role in the regulation of expression, subcellular location, binding and organelle-specific association of Wnt proteins. Plays also an important role in establishment of the anterior-posterior body axis formation during development.
SUBUNIT: Interacts with WNT3A (By similarity). Interacts with WNT1, WNT3 and WNT5.
SUBCELLULAR LOCATION: Golgi apparatus membrane; Multi-pass membrane protein. Cytoplasmic vesicle membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in kidney, lung, skin, intestine, brain, spinal cord, skeleton, eyes, excretion glands, tooth and palatal shelves.
DEVELOPMENTAL STAGE: Detected at E6.25 in the proximal epiblast at the junction between the embryonic and extraembryonic tissue. Later expression is more restricted to the primitive streak and mesoderm extending to the distal tip of the embryo. Strong expression is found in both posterior visceral endoderm and epiblast at the prestreak, but switched to the mesoderm at late- streak.
INDUCTION: Up-regulated by WNT1. Transcriptionally activated by beta-catenin and by LEF/TCF-dependent transcription.
DISRUPTION PHENOTYPE: Mice display embryonic lethality before E10.5. Embryos show defects in the establishment of the body axis and in the primitive streak and mesoderm formation.
SIMILARITY: Belongs to the wntless family.
SEQUENCE CAUTION: Sequence=AAH18381.1; Type=Erroneous initiation; Sequence=BAC26266.1; Type=Erroneous initiation; Sequence=BAC26300.1; Type=Erroneous initiation; Sequence=BAC32102.1; Type=Erroneous initiation; Sequence=BAC33950.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -67.60205-0.330 Picture PostScript Text
3' UTR -48.60219-0.222 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009551 - wntless

Pfam Domains:
PF06664 - Wnt-binding factor required for Wnt secretion

ModBase Predicted Comparative 3D Structure on Q6DID7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsemblEnsemblWormBase 
Protein SequenceProtein Sequence Protein SequenceProtein Sequence 
AlignmentAlignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0017147 Wnt-protein binding
GO:0031852 mu-type opioid receptor binding

Biological Process:
GO:0001707 mesoderm formation
GO:0006886 intracellular protein transport
GO:0007275 multicellular organism development
GO:0009948 anterior/posterior axis specification
GO:0016055 Wnt signaling pathway
GO:0030177 positive regulation of Wnt signaling pathway
GO:0030901 midbrain development
GO:0030902 hindbrain development
GO:0031017 exocrine pancreas development
GO:0061355 Wnt protein secretion
GO:0061357 positive regulation of Wnt protein secretion
GO:0090263 positive regulation of canonical Wnt signaling pathway

Cellular Component:
GO:0000139 Golgi membrane
GO:0005768 endosome
GO:0005769 early endosome
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005802 trans-Golgi network
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030659 cytoplasmic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0031901 early endosome membrane
GO:0032590 dendrite membrane
GO:0032839 dendrite cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC075615 - Mus musculus G protein-coupled receptor 177, mRNA (cDNA clone MGC:92992 IMAGE:5703610), complete cds.
AK029053 - Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732485M02 product:hypothetical protein, full insert sequence.
AK044810 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130003K07 product:hypothetical protein, full insert sequence.
AK031444 - Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030432I20 product:Putative NFkB activating protein homolog [Homo sapiens], full insert sequence.
AK029315 - Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4832420L08 product:hypothetical protein, full insert sequence.
AK019886 - Mus musculus 11 days pregnant adult female ovary and uterus cDNA, RIKEN full-length enriched library, clone:5031439A09 product:hypothetical protein, full insert sequence.
AK029104 - Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732493C08 product:hypothetical protein, full insert sequence.
AK128912 - Mus musculus cDNA fis, clone TRACH2024271.
AK049842 - Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630002O20 product:hypothetical protein, full insert sequence.
AK159207 - Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420009F06 product:Putative NFkB activating protein homolog [Homo sapiens], full insert sequence.
AK159977 - Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420041M04 product:Putative NFkB activating protein homolog [Homo sapiens], full insert sequence.
AK077407 - Mus musculus 10 days neonate head cDNA, RIKEN full-length enriched library, clone:5530400J03 product:RIKEN cDNA 5031439A09 gene, full insert sequence.
BC018381 - Mus musculus G protein-coupled receptor 177, mRNA (cDNA clone MGC:25946 IMAGE:4237619), complete cds.
AK190589 - Mus musculus cDNA, clone:Y1G0103D13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000068952, based on BLAT search.
AK209732 - Mus musculus cDNA, clone:Y2G0116A19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000029823, based on BLAT search.
AK212097 - Mus musculus cDNA, clone:Y2G0123N15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000029823, based on BLAT search.
AK184430 - Mus musculus cDNA, clone:Y0G0129P10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000029823, based on BLAT search.
AK191077 - Mus musculus cDNA, clone:Y1G0104M03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000029823, based on BLAT search.
AK214024 - Mus musculus cDNA, clone:Y2G0130F18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000029823, based on BLAT search.
AK213342 - Mus musculus cDNA, clone:Y2G0128A18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000029823, based on BLAT search.
AK198815 - Mus musculus cDNA, clone:Y1G0129E09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000068952, based on BLAT search.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6DID7 (Reactome details) participates in the following event(s):

R-MMU-3247839 Retromer associates with WLS
R-MMU-3247840 WLS binds WNT ligands in the Golgi
R-MMU-3247843 secretion of WNT ligands
R-MMU-3238698 WNT ligand biogenesis and trafficking
R-MMU-195721 Signaling by WNT
R-MMU-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: Gpr177, NM_001356350, Q6DID7, Q8CE42, Q9D2B7, uc029upj.1, uc029upj.2, WLS_MOUSE
UCSC ID: uc029upj.2
RefSeq Accession: NM_001356350
Protein: Q6DID7 (aka WLS_MOUSE)
CCDS: CCDS38684.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.