Mouse Gene Col6a3 (ENSMUST00000188587.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Col6a3 (from geneSymbol)
Gencode Transcript: ENSMUST00000188587.6
Gencode Gene: ENSMUSG00000048126.16
Transcript (Including UTRs)
Position: mm10 chr1:90,765,923-90,843,971 Size: 78,049 Total Exon Count: 41 Strand: -
Coding Region
Position: mm10 chr1:90,765,923-90,830,230 Size: 64,308 Coding Exon Count: 40
Data last updated at UCSC: 2019-09-20
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Human Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
LF192788 - JP 2014500723-A/291: Polycomb-Associated Non-Coding RNAs.AF064749 - Mus musculus type VI collagen alpha 3 subunit mRNA, complete cds.AF034136 - Mus musculus collagen alpha3(VI) (Col6a3) mRNA, partial cds.MA428365 - JP 2018138019-A/291: Polycomb-Associated Non-Coding RNAs.BC080662 - Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:4483085), partial cds.BC057903 - Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:5025735), complete cds.BC049881 - Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:5253759), complete cds.BC005491 - Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:3486796), partial cds.LF217008 - JP 2014500723-A/24511: Polycomb-Associated Non-Coding RNAs.LF217011 - JP 2014500723-A/24514: Polycomb-Associated Non-Coding RNAs.LF217013 - JP 2014500723-A/24516: Polycomb-Associated Non-Coding RNAs.LF217016 - JP 2014500723-A/24519: Polycomb-Associated Non-Coding RNAs.LF217019 - JP 2014500723-A/24522: Polycomb-Associated Non-Coding RNAs.LF217021 - JP 2014500723-A/24524: Polycomb-Associated Non-Coding RNAs.LF217023 - JP 2014500723-A/24526: Polycomb-Associated Non-Coding RNAs.LF217024 - JP 2014500723-A/24527: Polycomb-Associated Non-Coding RNAs.Z18279 - Mus musculus collagen alpha 3 chain type VI.LF217025 - JP 2014500723-A/24528: Polycomb-Associated Non-Coding RNAs.LF217026 - JP 2014500723-A/24529: Polycomb-Associated Non-Coding RNAs.LF217027 - JP 2014500723-A/24530: Polycomb-Associated Non-Coding RNAs.LF217028 - JP 2014500723-A/24531: Polycomb-Associated Non-Coding RNAs.LF217030 - JP 2014500723-A/24533: Polycomb-Associated Non-Coding RNAs.LF217032 - JP 2014500723-A/24535: Polycomb-Associated Non-Coding RNAs.LF217034 - JP 2014500723-A/24537: Polycomb-Associated Non-Coding RNAs.LF217036 - JP 2014500723-A/24539: Polycomb-Associated Non-Coding RNAs.LF217037 - JP 2014500723-A/24540: Polycomb-Associated Non-Coding RNAs.LF217038 - JP 2014500723-A/24541: Polycomb-Associated Non-Coding RNAs.LF217040 - JP 2014500723-A/24543: Polycomb-Associated Non-Coding RNAs.LF217041 - JP 2014500723-A/24544: Polycomb-Associated Non-Coding RNAs.AK076391 - Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732489C18 product:procollagen, type VI, alpha 3, full insert sequence.LF217044 - JP 2014500723-A/24547: Polycomb-Associated Non-Coding RNAs.LF217045 - JP 2014500723-A/24548: Polycomb-Associated Non-Coding RNAs.LF217046 - JP 2014500723-A/24549: Polycomb-Associated Non-Coding RNAs.LF217048 - JP 2014500723-A/24551: Polycomb-Associated Non-Coding RNAs.LF217050 - JP 2014500723-A/24553: Polycomb-Associated Non-Coding RNAs.LF217052 - JP 2014500723-A/24555: Polycomb-Associated Non-Coding RNAs.LF217055 - JP 2014500723-A/24558: Polycomb-Associated Non-Coding RNAs.LF217057 - JP 2014500723-A/24560: Polycomb-Associated Non-Coding RNAs.LF217061 - JP 2014500723-A/24564: Polycomb-Associated Non-Coding RNAs.LF217062 - JP 2014500723-A/24565: Polycomb-Associated Non-Coding RNAs.LF217064 - JP 2014500723-A/24567: Polycomb-Associated Non-Coding RNAs.LF217065 - JP 2014500723-A/24568: Polycomb-Associated Non-Coding RNAs.LF217066 - JP 2014500723-A/24569: Polycomb-Associated Non-Coding RNAs.LF217067 - JP 2014500723-A/24570: Polycomb-Associated Non-Coding RNAs.LF217068 - JP 2014500723-A/24571: Polycomb-Associated Non-Coding RNAs.LF217069 - JP 2014500723-A/24572: Polycomb-Associated Non-Coding RNAs.LF217071 - JP 2014500723-A/24574: Polycomb-Associated Non-Coding RNAs.LF217072 - JP 2014500723-A/24575: Polycomb-Associated Non-Coding RNAs.LF217074 - JP 2014500723-A/24577: Polycomb-Associated Non-Coding RNAs.LF217076 - JP 2014500723-A/24579: Polycomb-Associated Non-Coding RNAs.LF217077 - JP 2014500723-A/24580: Polycomb-Associated Non-Coding RNAs.LF217078 - JP 2014500723-A/24581: Polycomb-Associated Non-Coding RNAs.LF217080 - JP 2014500723-A/24583: Polycomb-Associated Non-Coding RNAs.LF217081 - JP 2014500723-A/24584: Polycomb-Associated Non-Coding RNAs.LF217082 - JP 2014500723-A/24585: Polycomb-Associated Non-Coding RNAs.LF217083 - JP 2014500723-A/24586: Polycomb-Associated Non-Coding RNAs.LF217084 - JP 2014500723-A/24587: Polycomb-Associated Non-Coding RNAs.LF217086 - JP 2014500723-A/24589: Polycomb-Associated Non-Coding RNAs.LF217087 - JP 2014500723-A/24590: Polycomb-Associated Non-Coding RNAs.LF217089 - JP 2014500723-A/24592: Polycomb-Associated Non-Coding RNAs.LF217095 - JP 2014500723-A/24598: Polycomb-Associated Non-Coding RNAs.LF217097 - JP 2014500723-A/24600: Polycomb-Associated Non-Coding RNAs.MA452585 - JP 2018138019-A/24511: Polycomb-Associated Non-Coding RNAs.MA452588 - JP 2018138019-A/24514: Polycomb-Associated Non-Coding RNAs.MA452590 - JP 2018138019-A/24516: Polycomb-Associated Non-Coding RNAs.MA452593 - JP 2018138019-A/24519: Polycomb-Associated Non-Coding RNAs.MA452596 - JP 2018138019-A/24522: Polycomb-Associated Non-Coding RNAs.MA452598 - JP 2018138019-A/24524: Polycomb-Associated Non-Coding RNAs.MA452600 - JP 2018138019-A/24526: Polycomb-Associated Non-Coding RNAs.MA452601 - JP 2018138019-A/24527: Polycomb-Associated Non-Coding RNAs.MA452602 - JP 2018138019-A/24528: Polycomb-Associated Non-Coding RNAs.MA452603 - JP 2018138019-A/24529: Polycomb-Associated Non-Coding RNAs.MA452604 - JP 2018138019-A/24530: Polycomb-Associated Non-Coding RNAs.MA452605 - JP 2018138019-A/24531: Polycomb-Associated Non-Coding RNAs.MA452607 - JP 2018138019-A/24533: Polycomb-Associated Non-Coding RNAs.MA452609 - JP 2018138019-A/24535: Polycomb-Associated Non-Coding RNAs.MA452611 - JP 2018138019-A/24537: Polycomb-Associated Non-Coding RNAs.MA452613 - JP 2018138019-A/24539: Polycomb-Associated Non-Coding RNAs.MA452614 - JP 2018138019-A/24540: Polycomb-Associated Non-Coding RNAs.MA452615 - JP 2018138019-A/24541: Polycomb-Associated Non-Coding RNAs.MA452617 - JP 2018138019-A/24543: Polycomb-Associated Non-Coding RNAs.MA452618 - JP 2018138019-A/24544: Polycomb-Associated Non-Coding RNAs.MA452621 - JP 2018138019-A/24547: Polycomb-Associated Non-Coding RNAs.MA452622 - JP 2018138019-A/24548: Polycomb-Associated Non-Coding RNAs.MA452623 - JP 2018138019-A/24549: Polycomb-Associated Non-Coding RNAs.MA452625 - JP 2018138019-A/24551: Polycomb-Associated Non-Coding RNAs.MA452627 - JP 2018138019-A/24553: Polycomb-Associated Non-Coding RNAs.MA452629 - JP 2018138019-A/24555: Polycomb-Associated Non-Coding RNAs.MA452632 - JP 2018138019-A/24558: Polycomb-Associated Non-Coding RNAs.MA452634 - JP 2018138019-A/24560: Polycomb-Associated Non-Coding RNAs.MA452638 - JP 2018138019-A/24564: Polycomb-Associated Non-Coding RNAs.MA452639 - JP 2018138019-A/24565: Polycomb-Associated Non-Coding RNAs.MA452641 - JP 2018138019-A/24567: Polycomb-Associated Non-Coding RNAs.MA452642 - JP 2018138019-A/24568: Polycomb-Associated Non-Coding RNAs.MA452643 - JP 2018138019-A/24569: Polycomb-Associated Non-Coding RNAs.MA452644 - JP 2018138019-A/24570: Polycomb-Associated Non-Coding RNAs.MA452645 - JP 2018138019-A/24571: Polycomb-Associated Non-Coding RNAs.MA452646 - JP 2018138019-A/24572: Polycomb-Associated Non-Coding RNAs.MA452648 - JP 2018138019-A/24574: Polycomb-Associated Non-Coding RNAs.MA452649 - JP 2018138019-A/24575: Polycomb-Associated Non-Coding RNAs.MA452651 - JP 2018138019-A/24577: Polycomb-Associated Non-Coding RNAs.MA452653 - JP 2018138019-A/24579: Polycomb-Associated Non-Coding RNAs.MA452654 - JP 2018138019-A/24580: Polycomb-Associated Non-Coding RNAs.MA452655 - JP 2018138019-A/24581: Polycomb-Associated Non-Coding RNAs.MA452657 - JP 2018138019-A/24583: Polycomb-Associated Non-Coding RNAs.MA452658 - JP 2018138019-A/24584: Polycomb-Associated Non-Coding RNAs.MA452659 - JP 2018138019-A/24585: Polycomb-Associated Non-Coding RNAs.MA452660 - JP 2018138019-A/24586: Polycomb-Associated Non-Coding RNAs.MA452661 - JP 2018138019-A/24587: Polycomb-Associated Non-Coding RNAs.MA452663 - JP 2018138019-A/24589: Polycomb-Associated Non-Coding RNAs.MA452664 - JP 2018138019-A/24590: Polycomb-Associated Non-Coding RNAs.MA452666 - JP 2018138019-A/24592: Polycomb-Associated Non-Coding RNAs.MA452672 - JP 2018138019-A/24598: Polycomb-Associated Non-Coding RNAs.MA452674 - JP 2018138019-A/24600: Polycomb-Associated Non-Coding RNAs.LF217111 - JP 2014500723-A/24614: Polycomb-Associated Non-Coding RNAs.LF217113 - JP 2014500723-A/24616: Polycomb-Associated Non-Coding RNAs.MA452688 - JP 2018138019-A/24614: Polycomb-Associated Non-Coding RNAs.MA452690 - JP 2018138019-A/24616: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes mmu04510 - Focal adhesionmmu04512 - ECM-receptor interactionmmu04974 - Protein digestion and absorption
Other Names for This Gene
Alternate Gene Symbols: A0A087WS16, AF064749, uc287kih.1UCSC ID: uc287kih.1RefSeq Accession: NM_001243009
CCDS: CCDS56640.1
Gene Model Information
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for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.