Mouse Gene Kat6b (ENSMUST00000182405.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus K(lysine) acetyltransferase 6B (Kat6b), transcript variant 1, mRNA. (from RefSeq NM_017479)
Gencode Transcript: ENSMUST00000182405.8
Gencode Gene: ENSMUSG00000021767.19
Transcript (Including UTRs)
   Position: mm10 chr14:21,499,785-21,672,133 Size: 172,349 Total Exon Count: 17 Strand: +
Coding Region
   Position: mm10 chr14:21,516,875-21,670,873 Size: 153,999 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:21,499,785-21,672,133)mRNA (may differ from genome)Protein (1763 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: KAT6B_MOUSE
DESCRIPTION: RecName: Full=Histone acetyltransferase KAT6B; EC=2.3.1.48; AltName: Full=MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4; Short=MYST-4; AltName: Full=Protein querkopf;
FUNCTION: Histone acetyltransferase which may be involved in both positive and negative regulation of transcription. Required for RUNX2-dependent transcriptional activation. Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity (By similarity). Involved in cerebral cortex development.
CATALYTIC ACTIVITY: Acetyl-CoA + [histone] = CoA + acetyl- [histone].
SUBUNIT: Component of the MOZ/MORF complex composed at least of ING5, KAT6A, KAT6B, MEAF6 and one of BRPF1, BRD1/BRPF2 and BRPF3 (By similarity). Interacts with RUNX1 and RUNX2 (By similarity).
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Ubiquitously expressed.
DEVELOPMENTAL STAGE: Strongly expressed in the ventricular zone of the developing cerebral cortex.
DOMAIN: The N-terminus is involved in transcriptional activation while the C-terminus is involved in transcriptional repression (By similarity).
PTM: Autoacetylated (By similarity).
PTM: Autoacetylation at Lys-633 is required for proper function (By similarity).
DISRUPTION PHENOTYPE: Mice have a low body weight, craniofacial abnormalities, and defects in cortex development. Mice carrying a gene trap insertion in the gene, produces approximately 5% of the normal amount of mRNA. The hypomorphic mutant displays a number of defects that mirror SBBYSS syndrome, although the phenotype is milder. Mice are of normal size at birth but fail to thrive and have brain developmental defects as well as craniofacial defects. Observed abnormalities include short and narrow palpebral fissures, low set ears, and malocclusion. Similar to individuals with SBBYSS, mice carrying the gene trap insertion have long, slender feet and disproportionally long first digits.
SIMILARITY: Belongs to the MYST (SAS/MOZ) family.
SIMILARITY: Contains 1 C2HC-type zinc finger.
SIMILARITY: Contains 1 H15 (linker histone H1/H5 globular) domain.
SIMILARITY: Contains 2 PHD-type zinc fingers.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D015632 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • C049584 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D016604 Aflatoxin B1
  • D000535 Aluminum
  • D001564 Benzo(a)pyrene
  • D002794 Choline
  • D005492 Folic Acid
  • D005557 Formaldehyde
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -160.90425-0.379 Picture PostScript Text
3' UTR -312.301260-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016181 - Acyl_CoA_acyltransferase
IPR005818 - Histone_H1/H5
IPR002717 - MOZ_SAS
IPR011991 - WHTH_trsnscrt_rep_DNA-bd
IPR011011 - Znf_FYVE_PHD
IPR001965 - Znf_PHD
IPR019787 - Znf_PHD-finger
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00538 - linker histone H1 and H5 family
PF00628 - PHD-finger
PF01853 - MOZ/SAS family

SCOP Domains:
46785 - "Winged helix" DNA-binding domain
55729 - Acyl-CoA N-acyltransferases (Nat)
57903 - FYVE/PHD zinc finger

ModBase Predicted Comparative 3D Structure on Q8BRB7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0004402 histone acetyltransferase activity
GO:0008134 transcription factor binding
GO:0016407 acetyltransferase activity
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups
GO:0044877 macromolecular complex binding
GO:0046872 metal ion binding

Biological Process:
GO:0006325 chromatin organization
GO:0006334 nucleosome assembly
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0016573 histone acetylation
GO:0043966 histone H3 acetylation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:1990830 cellular response to leukemia inhibitory factor

Cellular Component:
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0070776 MOZ/MORF histone acetyltransferase complex


-  Descriptions from all associated GenBank mRNAs
  LF199795 - JP 2014500723-A/7298: Polycomb-Associated Non-Coding RNAs.
AK147509 - Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1056N02 product:MYST histone acetyltransferase monocytic leukemia 4, full insert sequence.
AF222800 - Mus musculus histone acetyltransferase querkopf mRNA, complete cds.
AK045188 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130044K16 product:histone acetyltransferase, full insert sequence.
BC116664 - Mus musculus MYST histone acetyltransferase monocytic leukemia 4, mRNA (cDNA clone IMAGE:40087229), complete cds.
BC095974 - Mus musculus MYST histone acetyltransferase monocytic leukemia 4, mRNA (cDNA clone IMAGE:30479825), partial cds.
AK054340 - Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330017F13 product:histone acetyltransferase, full insert sequence.
MA435372 - JP 2018138019-A/7298: Polycomb-Associated Non-Coding RNAs.
AK052307 - Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330024P20 product:histone acetyltransferase, full insert sequence.
AK135465 - Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820425G08 product:MYST histone acetyltransferase monocytic leukemia 4, full insert sequence.
AK048336 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130049P13 product:histone acetyltransferase, full insert sequence.
AK083123 - Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630015G14 product:histone acetyltransferase, full insert sequence.
AK129129 - Mus musculus mRNA for mKIAA0383 protein.
LF239168 - JP 2014500723-A/46671: Polycomb-Associated Non-Coding RNAs.
LF239169 - JP 2014500723-A/46672: Polycomb-Associated Non-Coding RNAs.
LF239353 - JP 2014500723-A/46856: Polycomb-Associated Non-Coding RNAs.
LF239370 - JP 2014500723-A/46873: Polycomb-Associated Non-Coding RNAs.
MA474745 - JP 2018138019-A/46671: Polycomb-Associated Non-Coding RNAs.
MA474746 - JP 2018138019-A/46672: Polycomb-Associated Non-Coding RNAs.
MA474930 - JP 2018138019-A/46856: Polycomb-Associated Non-Coding RNAs.
MA474947 - JP 2018138019-A/46873: Polycomb-Associated Non-Coding RNAs.
LF239372 - JP 2014500723-A/46875: Polycomb-Associated Non-Coding RNAs.
LF239377 - JP 2014500723-A/46880: Polycomb-Associated Non-Coding RNAs.
LF239382 - JP 2014500723-A/46885: Polycomb-Associated Non-Coding RNAs.
LF239387 - JP 2014500723-A/46890: Polycomb-Associated Non-Coding RNAs.
LF199797 - JP 2014500723-A/7300: Polycomb-Associated Non-Coding RNAs.
LF239422 - JP 2014500723-A/46925: Polycomb-Associated Non-Coding RNAs.
LF239423 - JP 2014500723-A/46926: Polycomb-Associated Non-Coding RNAs.
LF239426 - JP 2014500723-A/46929: Polycomb-Associated Non-Coding RNAs.
LF239427 - JP 2014500723-A/46930: Polycomb-Associated Non-Coding RNAs.
LF239429 - JP 2014500723-A/46932: Polycomb-Associated Non-Coding RNAs.
LF239431 - JP 2014500723-A/46934: Polycomb-Associated Non-Coding RNAs.
LF239432 - JP 2014500723-A/46935: Polycomb-Associated Non-Coding RNAs.
LF239436 - JP 2014500723-A/46939: Polycomb-Associated Non-Coding RNAs.
LF239437 - JP 2014500723-A/46940: Polycomb-Associated Non-Coding RNAs.
LF239449 - JP 2014500723-A/46952: Polycomb-Associated Non-Coding RNAs.
LF239450 - JP 2014500723-A/46953: Polycomb-Associated Non-Coding RNAs.
LF239451 - JP 2014500723-A/46954: Polycomb-Associated Non-Coding RNAs.
AK086637 - Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930043E16 product:histone acetyltransferase, full insert sequence.
LF239452 - JP 2014500723-A/46955: Polycomb-Associated Non-Coding RNAs.
LF239453 - JP 2014500723-A/46956: Polycomb-Associated Non-Coding RNAs.
LF239456 - JP 2014500723-A/46959: Polycomb-Associated Non-Coding RNAs.
LF239457 - JP 2014500723-A/46960: Polycomb-Associated Non-Coding RNAs.
LF239458 - JP 2014500723-A/46961: Polycomb-Associated Non-Coding RNAs.
AK088138 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430004N18 product:histone acetyltransferase, full insert sequence.
LF239460 - JP 2014500723-A/46963: Polycomb-Associated Non-Coding RNAs.
LF239463 - JP 2014500723-A/46966: Polycomb-Associated Non-Coding RNAs.
LF239464 - JP 2014500723-A/46967: Polycomb-Associated Non-Coding RNAs.
MA474949 - JP 2018138019-A/46875: Polycomb-Associated Non-Coding RNAs.
MA474954 - JP 2018138019-A/46880: Polycomb-Associated Non-Coding RNAs.
MA474959 - JP 2018138019-A/46885: Polycomb-Associated Non-Coding RNAs.
MA474964 - JP 2018138019-A/46890: Polycomb-Associated Non-Coding RNAs.
MA435374 - JP 2018138019-A/7300: Polycomb-Associated Non-Coding RNAs.
MA474999 - JP 2018138019-A/46925: Polycomb-Associated Non-Coding RNAs.
MA475000 - JP 2018138019-A/46926: Polycomb-Associated Non-Coding RNAs.
MA475003 - JP 2018138019-A/46929: Polycomb-Associated Non-Coding RNAs.
MA475004 - JP 2018138019-A/46930: Polycomb-Associated Non-Coding RNAs.
MA475006 - JP 2018138019-A/46932: Polycomb-Associated Non-Coding RNAs.
MA475008 - JP 2018138019-A/46934: Polycomb-Associated Non-Coding RNAs.
MA475009 - JP 2018138019-A/46935: Polycomb-Associated Non-Coding RNAs.
MA475013 - JP 2018138019-A/46939: Polycomb-Associated Non-Coding RNAs.
MA475014 - JP 2018138019-A/46940: Polycomb-Associated Non-Coding RNAs.
MA475026 - JP 2018138019-A/46952: Polycomb-Associated Non-Coding RNAs.
MA475027 - JP 2018138019-A/46953: Polycomb-Associated Non-Coding RNAs.
MA475028 - JP 2018138019-A/46954: Polycomb-Associated Non-Coding RNAs.
MA475029 - JP 2018138019-A/46955: Polycomb-Associated Non-Coding RNAs.
MA475030 - JP 2018138019-A/46956: Polycomb-Associated Non-Coding RNAs.
MA475033 - JP 2018138019-A/46959: Polycomb-Associated Non-Coding RNAs.
MA475034 - JP 2018138019-A/46960: Polycomb-Associated Non-Coding RNAs.
MA475035 - JP 2018138019-A/46961: Polycomb-Associated Non-Coding RNAs.
MA475037 - JP 2018138019-A/46963: Polycomb-Associated Non-Coding RNAs.
MA475040 - JP 2018138019-A/46966: Polycomb-Associated Non-Coding RNAs.
MA475041 - JP 2018138019-A/46967: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8BRB7 (Reactome details) participates in the following event(s):

R-MMU-3318486 KAT6A, KAT6B-containing ING5 complexes acetylate replicative histone H3
R-MMU-3214847 HATs acetylate histones
R-MMU-3247509 Chromatin modifying enzymes
R-MMU-4839726 Chromatin organization

-  Other Names for This Gene
  Alternate Gene Symbols: E9QK86, KAT6B_MOUSE, Myst4, NM_017479, Q7TNW5, Q8BG35, Q8BRB7, Q8C441, Q9JKX5, uc007slg.1, uc007slg.2, uc007slg.3
UCSC ID: uc007slg.3
RefSeq Accession: NM_017479
Protein: Q8BRB7 (aka KAT6B_MOUSE)
CCDS: CCDS59615.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.