Mouse Gene Plekhb2 (ENSMUST00000027297.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus pleckstrin homology domain containing, family B (evectins) member 2 (Plekhb2), transcript variant 1, mRNA. (from RefSeq NM_145516)
Gencode Transcript: ENSMUST00000027297.10
Gencode Gene: ENSMUSG00000026123.11
Transcript (Including UTRs)
   Position: mm10 chr1:34,849,992-34,879,580 Size: 29,589 Total Exon Count: 8 Strand: +
Coding Region
   Position: mm10 chr1:34,861,881-34,877,047 Size: 15,167 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:34,849,992-34,879,580)mRNA (may differ from genome)Protein (221 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: PKHB2_MOUSE
DESCRIPTION: RecName: Full=Pleckstrin homology domain-containing family B member 2; Short=PH domain-containing family B member 2; AltName: Full=Evectin-2;
FUNCTION: Involved in retrograde transport of recycling endosomes (By similarity).
SUBCELLULAR LOCATION: Recycling endosome membrane (By similarity); Peripheral membrane protein. Note=Specifically detected in tubulovesicular structures, and colocalizes with TFNR (By similarity).
TISSUE SPECIFICITY: Highly expressed in brain, retina, heart and kidney. Detected at lower levels in lung, muscle and nerve.
DEVELOPMENTAL STAGE: Highly expressed at birth and up to day 3; expressed at lower levels in embryo and adult.
DOMAIN: The PH domain specifically binds phosphatidylserine, which is enriched in recycling endosome membranes, it doesn't recognize PIPs (By similarity).
SIMILARITY: Contains 1 PH domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.9080-0.236 Picture PostScript Text
3' UTR -839.702533-0.332 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology

Pfam Domains:
PF00169 - PH domain

SCOP Domains:
50729 - PH domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DHI - NMR


ModBase Predicted Comparative 3D Structure on Q9QZC7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding

Biological Process:
GO:0045595 regulation of cell differentiation

Cellular Component:
GO:0005768 endosome
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0055038 recycling endosome membrane


-  Descriptions from all associated GenBank mRNAs
  AK148653 - Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120430G17 product:pleckstrin homology domain containing, family B (evectins) member 2, full insert sequence.
BC057994 - Mus musculus pleckstrin homology domain containing, family B (evectins) member 2, mRNA (cDNA clone MGC:67806 IMAGE:5344583), complete cds.
AK039771 - Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330105O19 product:EVECTIN-2 homolog [Mus musculus], full insert sequence.
AK166091 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730037H23 product:pleckstrin homology domain containing, family B (evectins) member 2, full insert sequence.
AF189817 - Mus musculus evectin-2 (Evt2) mRNA, complete cds.
AK149868 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530024F20 product:pleckstrin homology domain containing, family B (evectins) member 2, full insert sequence.
AK150074 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530126J15 product:pleckstrin homology domain containing, family B (evectins) member 2, full insert sequence.
AK082118 - Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230009C22 product:similar to EVECTIN-2 [Mus musculus], full insert sequence.
AK179998 - Mus musculus cDNA, clone:Y0G0112I11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AK187330 - Mus musculus cDNA, clone:Y0G0141E13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AB352396 - Mus musculus non-coding RNA, oocyte_piRNA3212, complete sequence.
AK202406 - Mus musculus cDNA, clone:Y1G0141G15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AK179318 - Mus musculus cDNA, clone:Y0G0109O22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AK190116 - Mus musculus cDNA, clone:Y1G0101M11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AK213647 - Mus musculus cDNA, clone:Y2G0128P17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AK181418 - Mus musculus cDNA, clone:Y0G0118A21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AK189255 - Mus musculus cDNA, clone:Y0G0148H09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AK184332 - Mus musculus cDNA, clone:Y0G0129I21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.
AB350069 - Mus musculus non-coding RNA, oocyte_piRNA885, complete sequence.
AK211838 - Mus musculus cDNA, clone:Y2G0123A16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027297, based on BLAT search.

-  Other Names for This Gene
  Alternate Gene Symbols: Evt2, NM_145516, PKHB2_MOUSE, Q3UDH6, Q8C4I4, Q8CA27, Q9QZC7, uc007apl.1, uc007apl.2
UCSC ID: uc007apl.2
RefSeq Accession: NM_145516
Protein: Q9QZC7 (aka PKHB2_MOUSE)
CCDS: CCDS14874.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.