Mouse Gene Plaa (ENSMUST00000107107.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus phospholipase A2, activating protein (Plaa), mRNA. (from RefSeq NM_172695)
Gencode Transcript: ENSMUST00000107107.8
Gencode Gene: ENSMUSG00000028577.13
Transcript (Including UTRs)
   Position: mm10 chr4:94,569,167-94,603,244 Size: 34,078 Total Exon Count: 14 Strand: -
Coding Region
   Position: mm10 chr4:94,569,347-94,603,025 Size: 33,679 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:94,569,167-94,603,244)mRNA (may differ from genome)Protein (794 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
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PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: PLAP_MOUSE
DESCRIPTION: RecName: Full=Phospholipase A-2-activating protein; Short=PLA2P; Short=PLAP;
FUNCTION: Involved in the maintenance of ubiquitin levels (By similarity).
SUBUNIT: Interacts with ubiquitin. Interacts with VCP (By similarity).
INDUCTION: In smooth muscle and endothelial cells by leukotriene D4, by tumor necrosis factor in endothelial cells and by uric acid crystals in macrophages.
DOMAIN: The PUL domain is composed of 6 armadillo-like repeats and mediates the interaction with VCP C-terminus (By similarity).
DOMAIN: The PFU domain mediates interaction with ubiquitin (By similarity).
SIMILARITY: Belongs to the WD repeat PLAP family.
SIMILARITY: Contains 6 ARM repeats.
SIMILARITY: Contains 1 PFU domain.
SIMILARITY: Contains 1 PUL domain.
SIMILARITY: Contains 7 WD repeats.
SEQUENCE CAUTION: Sequence=AAA39943.1; Type=Miscellaneous discrepancy; Note=Several frameshifts and contaminating sequence; Sequence=Ref.3; Type=Frameshift; Positions=697;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C006780 bisphenol A
  • C049325 1,2-dithiol-3-thione
  • D015632 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C023514 2,6-dinitrotoluene
  • C518576 2-methylbutyric acid 4-((1,3)dioxan-5-ylmethoxyimino)-8-(2-(4-hydroxy-6-oxo-tetrahydropyran-2-yl)ethyl -7-methyl-6-oxo-1,2,3,4,6,7,8,8a-octahydronaphthyl)heptanoate
  • D000082 Acetaminophen
  • D000638 Amiodarone
  • D000643 Ammonium Chloride
  • D016718 Arachidonic Acid
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -108.20219-0.494 Picture PostScript Text
3' UTR -34.70180-0.193 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015155 - PLAA_fam_Ub-bd_PFU
IPR013535 - PUL
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat
PF08324 - PUL domain
PF09070 - PFU (PLAA family ubiquitin binding)

SCOP Domains:
48371 - ARM repeat
50952 - Soluble quinoprotein glucose dehydrogenase
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on P27612
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details    Gene Details
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Protein SequenceProtein Sequence Protein SequenceProtein Sequence 
AlignmentAlignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0016005 phospholipase A2 activator activity
GO:0043130 ubiquitin binding

Biological Process:
GO:0006693 prostaglandin metabolic process
GO:0006954 inflammatory response
GO:0007275 multicellular organism development
GO:0007399 nervous system development
GO:0010992 ubiquitin homeostasis
GO:0016236 macroautophagy
GO:0032430 positive regulation of phospholipase A2 activity
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0071222 cellular response to lipopolysaccharide
GO:1900045 negative regulation of protein K63-linked ubiquitination
GO:1903423 positive regulation of synaptic vesicle recycling
GO:1903861 positive regulation of dendrite extension
GO:2001224 positive regulation of neuron migration

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0030054 cell junction
GO:0045202 synapse
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK085027 - Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430026H23 product:phospholipase A2, activating protein, full insert sequence.
BC139355 - Mus musculus phospholipase A2, activating protein, mRNA (cDNA clone MGC:170982 IMAGE:8862377), complete cds.
BC139356 - Mus musculus phospholipase A2, activating protein, mRNA (cDNA clone MGC:170983 IMAGE:8862378), complete cds.
AK209141 - Mus musculus cDNA, clone:Y2G0114C02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000030312, based on BLAT search.
AK075934 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410007N06 product:phospholipase A2, activating protein, full insert sequence.
AK019070 - Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210417E17 product:phospholipase A2, activating protein, full insert sequence.
BC139773 - Mus musculus phospholipase A2, activating protein, mRNA (cDNA clone MGC:150304 IMAGE:40111789), complete cds.
AK164744 - Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN full-length enriched library, clone:D730004F24 product:phospholipase A2, activating protein, full insert sequence.
AK166122 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730041J07 product:phospholipase A2, activating protein, full insert sequence.
M57958 - Mouse phospholipase A-2-activating protein mRNA, complete cds.
AK186154 - Mus musculus cDNA, clone:Y0G0136H03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000030312, based on BLAT search.
AK153651 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630033M10 product:hypothetical protein, full insert sequence.
AK081641 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130058H18 product:phospholipase A2, activating protein, full insert sequence.
AK162534 - Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530086O10 product:phospholipase A2, activating protein, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04141 - Protein processing in endoplasmic reticulum

-  Other Names for This Gene
  Alternate Gene Symbols: A4QPD6, NM_172695, P27612, Plap, PLAP_MOUSE, Q8C6C4, uc008tsd.1, uc008tsd.2
UCSC ID: uc008tsd.2
RefSeq Accession: NM_172695
Protein: P27612 (aka PLAP_MOUSE)
CCDS: CCDS18359.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.