Human Gene CLCA4-AS1 (ENST00000456587.1) from GENCODE V43

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Human Gene CLCA4-AS1 (ENST00000456587.1) from GENCODE V43

Description: CLCA4-AS1 (from geneSymbol)
Gencode Transcript: ENST00000456587.1
Gencode Gene: ENSG00000236915.3
Transcript (Including UTRs)
Position: hg38 chr1:86,571,181-86,693,203 Size: 122,023 Total Exon Count: 4 Strand: -

Page Index	Sequence and Links	Primers	RNA-Seq Expression	Microarray Expression	Other Species
mRNA Descriptions	Other Names	Methods

Data last updated at UCSC: 2023-02-17 22:02:02

Sequence and Links to Tools and Databases

Genomic Sequence (chr1:86,571,181-86,693,203)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	Table Schema	BioGPS	Ensembl
ExonPrimer	Gencode	PubMed

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


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Microarray Expression Data


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Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs

Other Names for This Gene


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Methods, Credits, and Use Restrictions


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