Human Gene NDUFB1 (uc001yaf.3)
  Description: Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa (NDUFB1), nuclear gene encoding mitochondrial protein, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr14:92,582,468-92,588,153 Size: 5,686 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr14:92,582,537-92,588,121 Size: 5,585 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:92,582,468-92,588,153)mRNA (may differ from genome)Protein (105 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMGIOMIM
PubMedReactomeTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 78.00 RPKM in Heart - Left Ventricle
Total median expression: 1598.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -1.9032-0.059 Picture PostScript Text
3' UTR -6.7069-0.097 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF08040 - MNLL subunit

ModBase Predicted Comparative 3D Structure on O75438-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologNo ortholog
   Gene Details  
   Gene Sorter  
  EnsemblFlyBase  
  Protein SequenceProtein Sequence  
  AlignmentAlignment  

-  Descriptions from all associated GenBank mRNAs
  AF054181 - Homo sapiens CI-MNLL homolog gene mRNA, complete cds.
AF050638 - Homo sapiens NADH-ubiquinone oxidoreductase MNLL subunit mRNA, nuclear gene encoding mitochondrial protein, complete cds.
BC104672 - Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa, mRNA (cDNA clone IMAGE:6744304), partial cds.
BC009691 - Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa, mRNA (cDNA clone IMAGE:3901643), partial cds.
AK055348 - Homo sapiens cDNA FLJ30786 fis, clone FEBRA2000917.
BC126234 - Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa, mRNA (cDNA clone MGC:161512 IMAGE:8991950), complete cds.
BC126232 - Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa, mRNA (cDNA clone MGC:161510 IMAGE:8991948), complete cds.
AK316557 - Homo sapiens cDNA, FLJ48001.
KJ904518 - Synthetic construct Homo sapiens clone ccsbBroadEn_13912 NDUFB1 gene, encodes complete protein.
HQ258048 - Synthetic construct Homo sapiens clone IMAGE:100072357 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa (NDUFB1) gene, encodes complete protein.
KJ891675 - Synthetic construct Homo sapiens clone ccsbBroadEn_01069 NDUFB1 gene, encodes complete protein.
AB463916 - Synthetic construct DNA, clone: pF1KB6755, Homo sapiens NDUFB1 gene for NADH dehydrogenase (ubiquinone) 1 beta subcomplex, without stop codon, in Flexi system.
JD140748 - Sequence 121772 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00190 - Oxidative phosphorylation
hsa01100 - Metabolic pathways
hsa05010 - Alzheimer's disease
hsa05012 - Parkinson's disease
hsa05016 - Huntington's disease

Reactome (by CSHL, EBI, and GO)

Protein O75438 (Reactome details) participates in the following event(s):

R-HSA-6799178 Intermediate 1 binds HP subcomplex to form Intermediate 2
R-HSA-6799191 Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
R-HSA-6799202 The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
R-HSA-6799197 ND4, ND5 bind the 550kDa complex to form the 815kDa complex
R-HSA-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-HSA-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-HSA-163217 Complex I oxidises NADH to NAD+, reduces CoQ to QH2
R-HSA-6799198 Complex I biogenesis
R-HSA-611105 Respiratory electron transport
R-HSA-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: NM_004545, NP_004536, O75438-2
UCSC ID: uc001yaf.3
RefSeq Accession: NM_004545
Protein: O75438-2, splice isoform of O75438 CCDS: CCDS9901.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_004545.3
exon count: 3CDS single in 3' UTR: no RNA size: 433
ORF size: 318CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 695.00frame shift in genome: no % Coverage: 96.77
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.