Human Gene PARP9 (uc003efi.3)
Description: Homo sapiens poly (ADP-ribose) polymerase family, member 9 (PARP9), transcript variant 3, mRNA.
Transcript (Including UTRs)
Position: hg19 chr3:122,246,760-122,283,523 Size: 36,764 Total Exon Count: 11 Strand: -
Coding Region
Position: hg19 chr3:122,247,211-122,278,467 Size: 31,257 Coding Exon Count: 10
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF01661 - Macro domain
SCOP Domains: 52949 - Macro domain-like
56399 - ADP-ribosylation
ModBase Predicted Comparative 3D Structure on Q8IXQ6-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
LF210603 - JP 2014500723-A/18106: Polycomb-Associated Non-Coding RNAs.MA446180 - JP 2018138019-A/18106: Polycomb-Associated Non-Coding RNAs.LF385124 - JP 2014500723-A/192627: Polycomb-Associated Non-Coding RNAs.BC039580 - Homo sapiens poly (ADP-ribose) polymerase family, member 9, mRNA (cDNA clone MGC:48722 IMAGE:5416494), complete cds.AF307338 - Homo sapiens B aggressive lymphoma long isoform (BAL) mRNA, complete cds.AF307339 - Homo sapiens B aggressive lymphoma short isoform (BAL) mRNA, complete cds.AK130147 - Homo sapiens cDNA FLJ26637 fis, clone MPE00348, highly similar to Homo sapiens B aggressive lymphoma gene (BAL).AL713679 - Homo sapiens mRNA; cDNA DKFZp761I1617 (from clone DKFZp761I1617).AK123412 - Homo sapiens cDNA FLJ41418 fis, clone BRHIP2002122, highly similar to Homo sapiens B aggressive lymphoma long isoform (BAL) mRNA.AL832929 - Homo sapiens mRNA; cDNA DKFZp666B0810 (from clone DKFZp666B0810).BX648869 - Homo sapiens mRNA; cDNA DKFZp686M15238 (from clone DKFZp686M15238).JD502898 - Sequence 483922 from Patent EP1572962.AK299107 - Homo sapiens cDNA FLJ54723 complete cds, highly similar to Poly (ADP-ribose) polymerase 9 (EC 2.4.2.30).AK292959 - Homo sapiens cDNA FLJ75114 complete cds, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 9, mRNA.JD327507 - Sequence 308531 from Patent EP1572962.JD303457 - Sequence 284481 from Patent EP1572962.JD510549 - Sequence 491573 from Patent EP1572962.AK313494 - Homo sapiens cDNA, FLJ94047, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 9 (PARP9), mRNA.AB209742 - Homo sapiens mRNA for B aggressive lymphoma gene variant protein.BC017463 - Homo sapiens poly (ADP-ribose) polymerase family, member 9, mRNA (cDNA clone IMAGE:4862464).LF339153 - JP 2014500723-A/146656: Polycomb-Associated Non-Coding RNAs.LF339152 - JP 2014500723-A/146655: Polycomb-Associated Non-Coding RNAs.LF339150 - JP 2014500723-A/146653: Polycomb-Associated Non-Coding RNAs.LF339145 - JP 2014500723-A/146648: Polycomb-Associated Non-Coding RNAs.MA620701 - JP 2018138019-A/192627: Polycomb-Associated Non-Coding RNAs.MA574730 - JP 2018138019-A/146656: Polycomb-Associated Non-Coding RNAs.MA574729 - JP 2018138019-A/146655: Polycomb-Associated Non-Coding RNAs.MA574727 - JP 2018138019-A/146653: Polycomb-Associated Non-Coding RNAs.MA574722 - JP 2018138019-A/146648: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001146103.1
exon count:
11 CDS single in 3' UTR:
no
RNA size:
3254
ORF size:
2460 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
5112.50 frame shift in genome:
no
% Coverage:
99.51
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.