Human Gene TPTEP2-CSNK1E (uc011ant.3)
Description: Homo sapiens TPTE and PTEN homologous inositol lipid phosphatase pseudogene (TPTEP2-CSNK1E), non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr22:38,742,940-38,794,931 Size: 51,992 Total Exon Count: 6 Strand: -
Coding Region
Position: hg19 chr22:38,743,542-38,766,049 Size: 22,508 Coding Exon Count: 3
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK092269 - Homo sapiens cDNA FLJ34950 fis, clone NT2RP7017284, highly similar to Casein kinase I isoform epsilon (EC 2.7.11.1).AK310303 - Homo sapiens cDNA, FLJ17345.AK307225 - Homo sapiens cDNA, FLJ97173.AK124064 - Homo sapiens cDNA FLJ42070 fis, clone SYNOV2012326.JD129470 - Sequence 110494 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: AK307225, LOC400927, uc011ant.2UCSC ID: uc011ant.3RefSeq Accession: NR_002821
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AK307225.1
exon count:
6 CDS single in 3' UTR:
no
RNA size:
1075
ORF size:
270 CDS single in intron:
no
Alignment % ID:
99.72
txCdsPredict score:
740.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.