Human Gene NUDT15 (uc001vbw.1)
  Description: Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 15 (NUDT15), mRNA.
RefSeq Summary (NM_018283): This gene encodes an enzyme that belongs to the Nudix hydrolase superfamily. Members of this superfamily catalyze the hydrolysis of nucleoside diphosphates, including substrates like 8-oxo-dGTP, which are a result of oxidative damage, and can induce base mispairing during DNA replication, causing transversions. The encoded enzyme is a negative regulator of thiopurine activation and toxicity. Mutations in this gene result in poor metabolism of thiopurines, and are associated with thiopurine-induced early leukopenia. Multiple pseudogenes of this gene have been identified. [provided by RefSeq, Apr 2016].
Transcript (Including UTRs)
   Position: hg19 chr13:48,611,703-48,621,282 Size: 9,580 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr13:48,611,883-48,619,935 Size: 8,053 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:48,611,703-48,621,282)mRNA (may differ from genome)Protein (164 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NUD15_HUMAN
DESCRIPTION: RecName: Full=Probable 8-oxo-dGTP diphosphatase NUDT15; Short=8-oxo-dGTPase NUDT15; EC=3.6.1.55; AltName: Full=7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; AltName: Full=MutT homolog 2; Short=MTH2; AltName: Full=Nucleoside diphosphate-linked moiety X motif 15; Short=Nudix motif 15;
FUNCTION: Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can degrade 8-oxo-dGTP in vitro, suggesting that it may remove an oxidatively damaged form of guanine (7,8-dihydro-8- oxoguanine) from DNA and the nucleotide pool, thereby preventing misincorporation of 8-oxo-dGTP into DNA thus preventing A:T to C:G transversions. Its substrate specificity in vivo however remains unclear (By similarity). May have a role in DNA synthesis and cell cycle progression through the interaction with PCNA.
CATALYTIC ACTIVITY: 8-oxo-dGTP + H(2)O = 8-oxo-dGMP + diphosphate.
COFACTOR: Magnesium or manganese. Magnesium may be the real cofactor in vivo (By similarity).
SUBUNIT: Interacts with PCNA; interaction is disrupted in response to UV irradiation.
SIMILARITY: Belongs to the Nudix hydrolase family.
SIMILARITY: Contains 1 nudix hydrolase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NUDT15
Diseases sorted by gene-association score: thiopurines, poor metabolism of, 2* (575), azathioprine or 6-mercatopurine toxicity or dose selection* (18), thiopurines, poor metabolism of, 1 (12)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.48 RPKM in Esophagus - Mucosa
Total median expression: 356.55 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -86.64180-0.481 Picture PostScript Text
3' UTR -380.041347-0.282 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000086 - NUDIX_hydrolase_dom
IPR015797 - NUDIX_hydrolase_dom-like

Pfam Domains:
PF00293 - NUDIX domain

SCOP Domains:
55811 - Nudix

ModBase Predicted Comparative 3D Structure on Q9NV35
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004551 nucleotide diphosphatase activity
GO:0005515 protein binding
GO:0008413 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
GO:0016787 hydrolase activity
GO:0017110 nucleoside-diphosphatase activity
GO:0035529 NADH pyrophosphatase activity
GO:0035539 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity
GO:0046872 metal ion binding
GO:0047429 nucleoside-triphosphate diphosphatase activity

Biological Process:
GO:0000278 mitotic cell cycle
GO:0006195 purine nucleotide catabolic process
GO:0006203 dGTP catabolic process
GO:0034656 nucleobase-containing small molecule catabolic process
GO:0042262 DNA protection
GO:0042738 exogenous drug catabolic process
GO:0061136 regulation of proteasomal protein catabolic process
GO:1901292 nucleoside phosphate catabolic process

Cellular Component:
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  KJ899107 - Synthetic construct Homo sapiens clone ccsbBroadEn_08501 NUDT15 gene, encodes complete protein.
AK001818 - Homo sapiens cDNA FLJ10956 fis, clone PLACE1000420, weakly similar to 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE (EC 3.1.6.-).
BC133015 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 15, mRNA (cDNA clone MGC:164646 IMAGE:40147037), complete cds.
BC133017 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 15, mRNA (cDNA clone MGC:164648 IMAGE:40147039), complete cds.
JD195789 - Sequence 176813 from Patent EP1572962.
BC107875 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 15, mRNA (cDNA clone MGC:104352 IMAGE:6451308), complete cds.
BC050698 - Homo sapiens mRNA similar to hypothetical protein FLJ10956 (cDNA clone IMAGE:6007914).
BC064607 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 15, mRNA (cDNA clone IMAGE:5553843), partial cds.
JD229232 - Sequence 210256 from Patent EP1572962.
JD263686 - Sequence 244710 from Patent EP1572962.
JD024387 - Sequence 5411 from Patent EP1572962.
JD032974 - Sequence 13998 from Patent EP1572962.
JD219215 - Sequence 200239 from Patent EP1572962.
JD081835 - Sequence 62859 from Patent EP1572962.
JD286196 - Sequence 267220 from Patent EP1572962.
JD265769 - Sequence 246793 from Patent EP1572962.
JD494559 - Sequence 475583 from Patent EP1572962.
JD272132 - Sequence 253156 from Patent EP1572962.
JD198573 - Sequence 179597 from Patent EP1572962.
JD153575 - Sequence 134599 from Patent EP1572962.
JD428249 - Sequence 409273 from Patent EP1572962.
JD428250 - Sequence 409274 from Patent EP1572962.
JD550248 - Sequence 531272 from Patent EP1572962.
JD234077 - Sequence 215101 from Patent EP1572962.
JD234078 - Sequence 215102 from Patent EP1572962.
JD293099 - Sequence 274123 from Patent EP1572962.
JD270309 - Sequence 251333 from Patent EP1572962.
JD456606 - Sequence 437630 from Patent EP1572962.
JD121467 - Sequence 102491 from Patent EP1572962.
JD536132 - Sequence 517156 from Patent EP1572962.
JD274858 - Sequence 255882 from Patent EP1572962.
JD352591 - Sequence 333615 from Patent EP1572962.
JD337910 - Sequence 318934 from Patent EP1572962.
JD535461 - Sequence 516485 from Patent EP1572962.
JD460295 - Sequence 441319 from Patent EP1572962.
JD315054 - Sequence 296078 from Patent EP1572962.
JD514679 - Sequence 495703 from Patent EP1572962.
JD163695 - Sequence 144719 from Patent EP1572962.
JD554915 - Sequence 535939 from Patent EP1572962.
JD356521 - Sequence 337545 from Patent EP1572962.
JD506158 - Sequence 487182 from Patent EP1572962.
JD373922 - Sequence 354946 from Patent EP1572962.
JD226268 - Sequence 207292 from Patent EP1572962.
JD535170 - Sequence 516194 from Patent EP1572962.
JD302176 - Sequence 283200 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NV35 (Reactome details) participates in the following event(s):

R-HSA-2395876 NUDT15 hydrolyses 8-oxo-dGDP to 8-oxo-dGMP
R-HSA-2395869 NUDT15 hydrolyses 8-oxo-dGTP to 8-oxo-dGMP
R-HSA-2393930 Phosphate bond hydrolysis by NUDT proteins
R-HSA-74259 Purine catabolism
R-HSA-8956319 Nucleobase catabolism
R-HSA-15869 Metabolism of nucleotides
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A2RUR6, MTH2, NM_018283, NP_060753, NUD15_HUMAN, Q32Q27, Q6P2C9, Q9NV35
UCSC ID: uc001vbw.1
RefSeq Accession: NM_018283
Protein: Q9NV35 (aka NUD15_HUMAN)
CCDS: CCDS9407.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_018283.1
exon count: 3CDS single in 3' UTR: no RNA size: 2022
ORF size: 495CDS single in intron: no Alignment % ID: 99.90
txCdsPredict score: 957.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.