Human Gene PCSK7 (uc001pqr.3)
  Description: Homo sapiens proprotein convertase subtilisin/kexin type 7 (PCSK7), mRNA.
RefSeq Summary (NM_004716): This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. It encodes a type 1 membrane bound protease that is expressed in many tissues, including neuroendocrine, liver, gut, and brain. The encoded protein undergoes an initial autocatalytic processing event in the ER and then sorts to the trans-Golgi network through endosomes where a second autocatalytic event takes place and the catalytic activity is acquired. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. It can process proalbumin and is thought to be responsible for the activation of HIV envelope glycoproteins gp160 and gp140. This gene has been implicated in the transcriptional regulation of housekeeping genes and plays a role in the regulation of iron metabolism. A t(11;14)(q23;q32) chromosome translocation associated with B-cell lymphoma occurs between this gene and its inverted counterpart. [provided by RefSeq, Feb 2014].
Transcript (Including UTRs)
   Position: hg19 chr11:117,075,788-117,102,811 Size: 27,024 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr11:117,076,713-117,100,560 Size: 23,848 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:117,075,788-117,102,811)mRNA (may differ from genome)Protein (785 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PCSK7_HUMAN
DESCRIPTION: RecName: Full=Proprotein convertase subtilisin/kexin type 7; EC=3.4.21.-; AltName: Full=Lymphoma proprotein convertase; AltName: Full=Prohormone convertase 7; AltName: Full=Proprotein convertase 7; Short=PC7; AltName: Full=Proprotein convertase 8; Short=PC8; Short=hPC8; AltName: Full=Subtilisin/kexin-like protease PC7; Flags: Precursor;
FUNCTION: Likely to represent a ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RXXX[KR]R consensus motif.
CATALYTIC ACTIVITY: Release of mature proteins from their proproteins by cleavage of Arg-Xaa-Xaa-Xaa-Yaa-Arg-|-Zaa bonds, where Xaa can be any amino acid and Yaa is Arg or Lys.
COFACTOR: Calcium (By similarity).
ENZYME REGULATION: Inhibited by zinc and copper (By similarity).
SUBCELLULAR LOCATION: Golgi apparatus, trans-Golgi network membrane; Single-pass type I membrane protein (By similarity). Note=Seems to be localized intracellularly to the trans Golgi network (By similarity).
TISSUE SPECIFICITY: Expressed in spleen, thymus, prostate, testis, ovary, small intestine, colon and peripheral blood leukocyte.
PTM: Cysteine residues in the cytoplasmic tail are probably palmitoylated.
PTM: N-glycosylated.
SIMILARITY: Belongs to the peptidase S8 family.
SIMILARITY: Contains 1 homo B/P domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): PCSK7
CDC HuGE Published Literature: PCSK7
Positive Disease Associations: Cholesterol, HDL , Iron-Regulatory Proteins , Triglycerides
Related Studies:
  1. Cholesterol, HDL
    , , . [PubMed 0]
  2. Cholesterol, HDL
    , , . [PubMed 0]
  3. Iron-Regulatory Proteins
    Konrad Oexle et al. Human molecular genetics 2011, Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels., Human molecular genetics. [PubMed 21149283]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: PCSK7
Diseases sorted by gene-association score: plantar fasciitis (9), leber congenital amaurosis 4 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.33 RPKM in Small Intestine - Terminal Ileum
Total median expression: 356.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -71.50201-0.356 Picture PostScript Text
3' UTR -340.37925-0.368 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008979 - Galactose-bd-like
IPR000209 - Peptidase_S8/S53
IPR022398 - Peptidase_S8_His-AS
IPR023828 - Peptidase_S8_Ser-AS
IPR015500 - Peptidase_S8_subtilisin-rel
IPR009020 - Prot_inh_propept
IPR002884 - PrprotnconvertsP

Pfam Domains:
PF00082 - Subtilase family
PF01483 - Proprotein convertase P-domain
PF16470 - Peptidase S8 pro-domain

SCOP Domains:
49785 - Galactose-binding domain-like
52743 - Subtilisin-like

ModBase Predicted Comparative 3D Structure on Q16549
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologGenome Browser
 Gene Details   Gene Details
 Gene Sorter   Gene Sorter
 RGDEnsembl  SGD
 Protein SequenceProtein Sequence  Protein Sequence
 AlignmentAlignment  Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006508 proteolysis
GO:0016485 protein processing
GO:0016486 peptide hormone processing

Cellular Component:
GO:0005794 Golgi apparatus
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030173 integral component of Golgi membrane


-  Descriptions from all associated GenBank mRNAs
  LP858662 - Sequence 13 from Patent WO2017141032.
U40623 - Human subtilisin-like protease PC8 precursor (PC8) mRNA, complete cds.
BC006357 - Homo sapiens proprotein convertase subtilisin/kexin type 7, mRNA (cDNA clone MGC:12699 IMAGE:4125594), complete cds.
BC010696 - Homo sapiens proprotein convertase subtilisin/kexin type 7, mRNA (cDNA clone MGC:17703 IMAGE:3868257), complete cds.
AK127262 - Homo sapiens cDNA FLJ45329 fis, clone BRHIP3007183, highly similar to Proprotein convertase subtilisin/kexin type 7 precursor (EC 3.4.21.-).
AK097207 - Homo sapiens cDNA FLJ39888 fis, clone SPLEN2016533, highly similar to Proprotein convertase subtilisin/kexin type 7 precursor (EC 3.4.21.-).
U33849 - Human lymphoma proprotein convertase (LPC) mRNA, complete cds.
JD477713 - Sequence 458737 from Patent EP1572962.
JD432362 - Sequence 413386 from Patent EP1572962.
JD323602 - Sequence 304626 from Patent EP1572962.
JD019562 - Sequence 586 from Patent EP1572962.
JD030040 - Sequence 11064 from Patent EP1572962.
JD108134 - Sequence 89158 from Patent EP1572962.
JD477687 - Sequence 458711 from Patent EP1572962.
JD024148 - Sequence 5172 from Patent EP1572962.
JD334530 - Sequence 315554 from Patent EP1572962.
JD205670 - Sequence 186694 from Patent EP1572962.
JD277162 - Sequence 258186 from Patent EP1572962.
JD561251 - Sequence 542275 from Patent EP1572962.
JD165398 - Sequence 146422 from Patent EP1572962.
JD381593 - Sequence 362617 from Patent EP1572962.
JD195566 - Sequence 176590 from Patent EP1572962.
JD186286 - Sequence 167310 from Patent EP1572962.
JD464841 - Sequence 445865 from Patent EP1572962.
JD507542 - Sequence 488566 from Patent EP1572962.
JD043782 - Sequence 24806 from Patent EP1572962.
JD052135 - Sequence 33159 from Patent EP1572962.
JD541503 - Sequence 522527 from Patent EP1572962.
JD490339 - Sequence 471363 from Patent EP1572962.
JD389672 - Sequence 370696 from Patent EP1572962.
JD494151 - Sequence 475175 from Patent EP1572962.
AK222907 - Homo sapiens mRNA for proprotein convertase subtilisin/kexin type 7 preproprotein variant, clone: HRC05265.
JD539487 - Sequence 520511 from Patent EP1572962.
AK312429 - Homo sapiens cDNA, FLJ92773, Homo sapiens proprotein convertase subtilisin/kexin type 7 (PCSK7),mRNA.
BT006870 - Homo sapiens proprotein convertase subtilisin/kexin type 7 mRNA, complete cds.
DQ890632 - Synthetic construct clone IMAGE:100003262; FLH164546.01X; RZPDo839H05162D proprotein convertase subtilisin/kexin type 7 (PCSK7) gene, encodes complete protein.
DQ893803 - Synthetic construct Homo sapiens clone IMAGE:100008263; FLH164542.01L; RZPDo839H05161D proprotein convertase subtilisin/kexin type 7 (PCSK7) gene, encodes complete protein.
AB231710 - Homo sapiens mRNA for hypothetical protein, partial cds, clone:Hsa11-digit08-11-02-F.
AB231711 - Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit08-11-04-R.
AB231712 - Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit08-11-06-R.
JD492496 - Sequence 473520 from Patent EP1572962.
AK027156 - Homo sapiens cDNA: FLJ23503 fis, clone LNG02870.
JD423773 - Sequence 404797 from Patent EP1572962.
JD128502 - Sequence 109526 from Patent EP1572962.
JD520297 - Sequence 501321 from Patent EP1572962.
JD367859 - Sequence 348883 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B0YJ60, LPC, NM_004716, NP_004707, PC7, PC8, PCSK7_HUMAN, Q16549, Q3C1X1, Q53GM4, Q96FK8, Q9UL57, SPC7
UCSC ID: uc001pqr.3
RefSeq Accession: NM_004716
Protein: Q16549 (aka PCSK7_HUMAN or PCK7_HUMAN)
CCDS: CCDS8382.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_004716.2
exon count: 17CDS single in 3' UTR: no RNA size: 3497
ORF size: 2358CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 4727.00frame shift in genome: no % Coverage: 99.63
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.