Human Gene X69637 (uc010vfy.1)
  Description: H.sapiens mRNA sequence (16p11.2).
Transcript (Including UTRs)
   Position: hg19 chr16:32,772,266-32,782,580 Size: 10,315 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:32,772,266-32,782,580)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.12 RPKM in Testis
Total median expression: 0.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  X69637 - H.sapiens mRNA sequence (16p11.2).
JD200805 - Sequence 181829 from Patent EP1572962.
JD424850 - Sequence 405874 from Patent EP1572962.
JD410394 - Sequence 391418 from Patent EP1572962.
JD274150 - Sequence 255174 from Patent EP1572962.
JD265705 - Sequence 246729 from Patent EP1572962.
JD169469 - Sequence 150493 from Patent EP1572962.
JD361417 - Sequence 342441 from Patent EP1572962.
JD354565 - Sequence 335589 from Patent EP1572962.
JD184702 - Sequence 165726 from Patent EP1572962.
JD454767 - Sequence 435791 from Patent EP1572962.
JD331985 - Sequence 313009 from Patent EP1572962.
JD447635 - Sequence 428659 from Patent EP1572962.
JD377863 - Sequence 358887 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc010vfy.1
Representative RNA: X69637

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: X69637.1
exon count: 5CDS single in 3' UTR: no RNA size: 1662
ORF size: 0CDS single in intron: no Alignment % ID: 99.94
txCdsPredict score: 295.00frame shift in genome: no % Coverage: 78.52
has start codon: no stop codon in genome: no # of Alignments: 2
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.