Human Gene BBOF1 (uc010tup.2)
Description: Homo sapiens coiled-coil domain containing 176 (BBOF1), mRNA.
Transcript (Including UTRs)
Position: hg19 chr14:74,486,059-74,532,796 Size: 46,738 Total Exon Count: 12 Strand: +
Coding Region
Position: hg19 chr14:74,486,182-74,531,402 Size: 45,221 Coding Exon Count: 12
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CC176_HUMAN
DESCRIPTION: RecName: Full=Coiled-coil domain-containing protein 176;
SEQUENCE CAUTION: Sequence=AAI04980.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAI04982.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAB15572.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BC044808; Type=Frameshift; Positions=428, 448;
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF14988 - Domain of unknown function (DUF4515)
ModBase Predicted Comparative 3D Structure on Q8ND07
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC044808 - Homo sapiens chromosome 14 open reading frame 45, mRNA (cDNA clone IMAGE:4823236), containing frame-shift errors.AK097531 - Homo sapiens cDNA FLJ40212 fis, clone TESTI2021116.AL834487 - Homo sapiens mRNA; cDNA DKFZp434O1830 (from clone DKFZp434O1830).JD182451 - Sequence 163475 from Patent EP1572962.AK026842 - Homo sapiens cDNA: FLJ23189 fis, clone LNG12061.BC104981 - Homo sapiens chromosome 14 open reading frame 45, mRNA (cDNA clone IMAGE:8143984), complete cds.BC104979 - Homo sapiens chromosome 14 open reading frame 45, mRNA (cDNA clone IMAGE:8143982), complete cds.JD250783 - Sequence 231807 from Patent EP1572962.JD239217 - Sequence 220241 from Patent EP1572962.LF209597 - JP 2014500723-A/17100: Polycomb-Associated Non-Coding RNAs.CU678803 - Synthetic construct Homo sapiens gateway clone IMAGE:100020268 3' read ALDH6A1 mRNA.JD164946 - Sequence 145970 from Patent EP1572962.JD520037 - Sequence 501061 from Patent EP1572962.JD416112 - Sequence 397136 from Patent EP1572962.JD130119 - Sequence 111143 from Patent EP1572962.JD075121 - Sequence 56145 from Patent EP1572962.JD134210 - Sequence 115234 from Patent EP1572962.JD279218 - Sequence 260242 from Patent EP1572962.JD363239 - Sequence 344263 from Patent EP1572962.JD269912 - Sequence 250936 from Patent EP1572962.JD042785 - Sequence 23809 from Patent EP1572962.JD245333 - Sequence 226357 from Patent EP1572962.JD359748 - Sequence 340772 from Patent EP1572962.JD247401 - Sequence 228425 from Patent EP1572962.JD325270 - Sequence 306294 from Patent EP1572962.JD315586 - Sequence 296610 from Patent EP1572962.MA445174 - JP 2018138019-A/17100: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: C14orf45, CC176_HUMAN, CCDC176, NM_025057, NP_079333, Q0P604, Q8ND07, Q9H5P8UCSC ID: uc010tup.2RefSeq Accession: NM_025057
Protein: Q8ND07
(aka CC176_HUMAN)
CCDS: CCDS32119.2
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_025057.2
exon count:
12 CDS single in 3' UTR:
no
RNA size:
3123
ORF size:
1590 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2551.00 frame shift in genome:
no
% Coverage:
99.49
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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