Human Gene FAM193A (uc010ick.3)
Description: Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr4:2,597,828-2,734,302 Size: 136,475 Total Exon Count: 20 Strand: +
Coding Region
Position: hg19 chr4:2,597,829-2,733,595 Size: 135,767 Coding Exon Count: 20
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): FAM193A
CDC HuGE Published Literature: FAM193A
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF15914 - FAM193 family C-terminal
ModBase Predicted Comparative 3D Structure on P78312-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
AB385173 - Synthetic construct DNA, clone: pF1KB7007, Homo sapiens C4orf8 gene for C4orf8 protein, complete cds, without stop codon, in Flexi system.AK308449 - Homo sapiens cDNA, FLJ98397.AB000459 - Homo sapiens mRNA, complete cds, clone: RES4-22A.AB000460 - Homo sapiens mRNA, complete cds, clone:RES4-22B.AB000461 - Homo sapiens mRNA, complete cds, clone:RES4-22C.BC136646 - Homo sapiens chromosome 4 open reading frame 8, mRNA (cDNA clone MGC:168259 IMAGE:9020636), complete cds.BC144337 - Homo sapiens cDNA clone IMAGE:9052857.BC144339 - Homo sapiens cDNA clone IMAGE:9052859.BC144340 - Homo sapiens chromosome 4 open reading frame 8, mRNA (cDNA clone MGC:177877 IMAGE:9052860), complete cds.JD389963 - Sequence 370987 from Patent EP1572962.JD125094 - Sequence 106118 from Patent EP1572962.JD054817 - Sequence 35841 from Patent EP1572962.JD494005 - Sequence 475029 from Patent EP1572962.AB001563 - Homo sapiens mRNA for RES4-22D, partial cds.AF040966 - Homo sapiens unknown protein IT14 mRNA, partial cds.AK303732 - Homo sapiens cDNA FLJ51441 partial cds.JD333503 - Sequence 314527 from Patent EP1572962.AK307430 - Homo sapiens cDNA, FLJ97378.JD270359 - Sequence 251383 from Patent EP1572962.JD445396 - Sequence 426420 from Patent EP1572962.JD116519 - Sequence 97543 from Patent EP1572962.JD399285 - Sequence 380309 from Patent EP1572962.JD231859 - Sequence 212883 from Patent EP1572962.JD480729 - Sequence 461753 from Patent EP1572962.JD494255 - Sequence 475279 from Patent EP1572962.JD206488 - Sequence 187512 from Patent EP1572962.JD192954 - Sequence 173978 from Patent EP1572962.JD090640 - Sequence 71664 from Patent EP1572962.JD390945 - Sequence 371969 from Patent EP1572962.JD246271 - Sequence 227295 from Patent EP1572962.JD480268 - Sequence 461292 from Patent EP1572962.JD211432 - Sequence 192456 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: AB385173, C4orf8, NM_003704, NP_003695, P78312-2, RES4-22UCSC ID: uc010ick.3RefSeq Accession: NM_003704
Protein: P78312-2 , splice isoform of P78312
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AB385173.1
exon count:
20 CDS single in 3' UTR:
no
RNA size:
4289
ORF size:
4275 CDS single in intron:
no
Alignment % ID:
99.95
txCdsPredict score:
7034.00 frame shift in genome:
no
% Coverage:
99.63
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.