Human Gene HPX (uc001mdg.2)
  Description: Homo sapiens hemopexin (HPX), mRNA.
RefSeq Summary (NM_000613): This gene encodes a plasma glycoprotein that binds heme with high affinity. The encoded protein is an acute phase protein that transports heme from the plasma to the liver and may be involved in protecting cells from oxidative stress. [provided by RefSeq, Apr 2009].
Transcript (Including UTRs)
   Position: hg19 chr11:6,452,268-6,462,254 Size: 9,987 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr11:6,452,441-6,462,193 Size: 9,753 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:6,452,268-6,462,254)mRNA (may differ from genome)Protein (462 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HEMO_HUMAN
DESCRIPTION: RecName: Full=Hemopexin; AltName: Full=Beta-1B-glycoprotein; Flags: Precursor;
FUNCTION: Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
SUBUNIT: Interacts with HEV ORF3 protein. Interacts with FLVCR1.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed by the liver and secreted in plasma.
PTM: N- and O-glycosylated. O-glycosylated with core 1 or possibly core 8 glycans.
MISCELLANEOUS: The isolated N-terminal domain binds one heme. The full-length protein also binds one heme, but at a different site. The physiological significance of this is not clear (By similarity).
SIMILARITY: Belongs to the hemopexin family.
SIMILARITY: Contains 5 hemopexin-like domains.
SEQUENCE CAUTION: Sequence=CAA26382.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): HPX
CDC HuGE Published Literature: HPX

-  MalaCards Disease Associations
  MalaCards Gene Search: HPX
Diseases sorted by gene-association score: blackwater fever (5), testicular yolk sac tumor (3), pediatric multiple sclerosis (2), atransferrinemia (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1180.68 RPKM in Liver
Total median expression: 1218.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.3061-0.316 Picture PostScript Text
3' UTR -49.12173-0.284 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000585 - Hemopexin/matrixin
IPR018486 - Hemopexin/matrixin_CS
IPR018487 - Hemopexin/matrixin_repeat
IPR016358 - Hemopexin_chordata

Pfam Domains:
PF00045 - Hemopexin

SCOP Domains:
50923 - Hemopexin-like domain

ModBase Predicted Comparative 3D Structure on P02790
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0015232 heme transporter activity
GO:0046872 metal ion binding

Biological Process:
GO:0002639 positive regulation of immunoglobulin production
GO:0002925 positive regulation of humoral immune response mediated by circulating immunoglobulin
GO:0006879 cellular iron ion homeostasis
GO:0006898 receptor-mediated endocytosis
GO:0015886 heme transport
GO:0016032 viral process
GO:0020027 hemoglobin metabolic process
GO:0042168 heme metabolic process
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0051246 regulation of protein metabolic process
GO:0060332 positive regulation of response to interferon-gamma
GO:0060335 positive regulation of interferon-gamma-mediated signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0070062 extracellular exosome
GO:0071682 endocytic vesicle lumen
GO:0072562 blood microparticle


-  Descriptions from all associated GenBank mRNAs
  X02537 - Human mRNA for serum beta-glycoprotein hemopexin.
J03048 - Huma hemopexin mRNA, 3' end.
BC005395 - Homo sapiens hemopexin, mRNA (cDNA clone MGC:12533 IMAGE:4071616), complete cds.
GQ891443 - Homo sapiens clone HEL-S-164 epididymis secretory sperm binding protein mRNA, complete cds.
AK313648 - Homo sapiens cDNA, FLJ94225, highly similar to Homo sapiens hemopexin (HPX), mRNA.
JF432450 - Synthetic construct Homo sapiens clone IMAGE:100073661 hemopexin (HPX) gene, encodes complete protein.
KJ901496 - Synthetic construct Homo sapiens clone ccsbBroadEn_10890 HPX gene, encodes complete protein.
AK303758 - Homo sapiens cDNA FLJ56652 complete cds, highly similar to Hemopexin precursor.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P02790 (Reactome details) participates in the following event(s):

R-HSA-2168884 Ferriheme is transferred from Methemoglobin to Hemopexin
R-HSA-2168886 Hemopexin binds Heme b
R-HSA-2168887 Ferriheme is transferred from Albumin to Hemopexin
R-HSA-2168897 LRP1 (CD91) binds Hemopexin:heme
R-HSA-2168880 Scavenging of heme from plasma
R-HSA-2173782 Binding and Uptake of Ligands by Scavenger Receptors
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: B2R957, HEMO_HUMAN, NM_000613, NP_000604, P02790
UCSC ID: uc001mdg.2
RefSeq Accession: NM_000613
Protein: P02790 (aka HEMO_HUMAN)
CCDS: CCDS7763.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_000613.2
exon count: 10CDS single in 3' UTR: no RNA size: 1635
ORF size: 1389CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2978.00frame shift in genome: no % Coverage: 99.27
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.