Human Gene TNFRSF14-AS1 (uc001ajo.2)
  Description: Homo sapiens uncharacterized TNFRSF14-AS1 (TNFRSF14-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:2,481,359-2,484,284 Size: 2,926 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:2,481,359-2,484,284)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.65 RPKM in Small Intestine - Terminal Ileum
Total median expression: 164.95 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK021767 - Homo sapiens cDNA FLJ11705 fis, clone HEMBA1005083.
AK128532 - Homo sapiens cDNA FLJ46690 fis, clone TRACH3012460.
JD558399 - Sequence 539423 from Patent EP1572962.
JD564511 - Sequence 545535 from Patent EP1572962.
JD462368 - Sequence 443392 from Patent EP1572962.
JD211695 - Sequence 192719 from Patent EP1572962.
JD370316 - Sequence 351340 from Patent EP1572962.
BC101995 - Homo sapiens cDNA clone IMAGE:40023121.
BC101996 - Homo sapiens cDNA clone IMAGE:40023120.
BC101997 - Homo sapiens cDNA clone IMAGE:40023119.
BC103697 - Homo sapiens cDNA clone IMAGE:40023118.
BC114358 - Homo sapiens cDNA clone IMAGE:40023123.
BC114357 - Homo sapiens cDNA clone IMAGE:40023122.
AL359943 - Homo sapiens mRNA; cDNA DKFZp762D186 (from clone DKFZp762D186).
CR749717 - Homo sapiens mRNA; cDNA DKFZp762D186 (from clone DKFZp762D186).
JD149937 - Sequence 130961 from Patent EP1572962.
JD036793 - Sequence 17817 from Patent EP1572962.
JD102285 - Sequence 83309 from Patent EP1572962.
JD548295 - Sequence 529319 from Patent EP1572962.
JD254105 - Sequence 235129 from Patent EP1572962.
JD407840 - Sequence 388864 from Patent EP1572962.
JD055126 - Sequence 36150 from Patent EP1572962.
JD456431 - Sequence 437455 from Patent EP1572962.
JD334810 - Sequence 315834 from Patent EP1572962.
JD183269 - Sequence 164293 from Patent EP1572962.
JD155455 - Sequence 136479 from Patent EP1572962.
JD434356 - Sequence 415380 from Patent EP1572962.
JD381537 - Sequence 362561 from Patent EP1572962.
JD318860 - Sequence 299884 from Patent EP1572962.
JD469367 - Sequence 450391 from Patent EP1572962.
JD442007 - Sequence 423031 from Patent EP1572962.
JD329682 - Sequence 310706 from Patent EP1572962.
JD240593 - Sequence 221617 from Patent EP1572962.
JD486971 - Sequence 467995 from Patent EP1572962.
JD404452 - Sequence 385476 from Patent EP1572962.
JD334295 - Sequence 315319 from Patent EP1572962.
JD445301 - Sequence 426325 from Patent EP1572962.
JD173065 - Sequence 154089 from Patent EP1572962.
JD202960 - Sequence 183984 from Patent EP1572962.
JD326101 - Sequence 307125 from Patent EP1572962.
JD218374 - Sequence 199398 from Patent EP1572962.
JD334380 - Sequence 315404 from Patent EP1572962.
JD203892 - Sequence 184916 from Patent EP1572962.
JD394942 - Sequence 375966 from Patent EP1572962.
JD382081 - Sequence 363105 from Patent EP1572962.
JD445416 - Sequence 426440 from Patent EP1572962.
JD066021 - Sequence 47045 from Patent EP1572962.
JD368930 - Sequence 349954 from Patent EP1572962.
JD178061 - Sequence 159085 from Patent EP1572962.
JD440591 - Sequence 421615 from Patent EP1572962.
JD408629 - Sequence 389653 from Patent EP1572962.
JD159598 - Sequence 140622 from Patent EP1572962.
JD078617 - Sequence 59641 from Patent EP1572962.
JD453551 - Sequence 434575 from Patent EP1572962.
JD475575 - Sequence 456599 from Patent EP1572962.
JD483507 - Sequence 464531 from Patent EP1572962.
JD336305 - Sequence 317329 from Patent EP1572962.
JD192125 - Sequence 173149 from Patent EP1572962.
JD109737 - Sequence 90761 from Patent EP1572962.
JD459311 - Sequence 440335 from Patent EP1572962.
JD458610 - Sequence 439634 from Patent EP1572962.
JD383673 - Sequence 364697 from Patent EP1572962.
JD069272 - Sequence 50296 from Patent EP1572962.
JD139744 - Sequence 120768 from Patent EP1572962.
JD291990 - Sequence 273014 from Patent EP1572962.
JD446491 - Sequence 427515 from Patent EP1572962.
JD337061 - Sequence 318085 from Patent EP1572962.
JD484917 - Sequence 465941 from Patent EP1572962.
JD395099 - Sequence 376123 from Patent EP1572962.
JD408869 - Sequence 389893 from Patent EP1572962.
JD230881 - Sequence 211905 from Patent EP1572962.
JD088957 - Sequence 69981 from Patent EP1572962.
JD220409 - Sequence 201433 from Patent EP1572962.
JD138671 - Sequence 119695 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK021767, LOC115110
UCSC ID: uc001ajo.2
RefSeq Accession: NR_026927

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK021767.1
exon count: 3CDS single in 3' UTR: no RNA size: 1629
ORF size: 0CDS single in intron: no Alignment % ID: 99.69
txCdsPredict score: 70.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.