Human Gene NPIPB13 (uc010vem.2)
Description: Homo sapiens nuclear pore complex interacting protein pseudogene (NPIPB13), non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr16:30,234,350-30,257,122 Size: 22,773 Total Exon Count: 8 Strand: -
Coding Region
Position: hg19 chr16:30,234,350-30,256,894 Size: 22,545 Coding Exon Count: 7
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: YP038_HUMAN
DESCRIPTION: RecName: Full=Putative NPIP-like protein LOC613037;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).SIMILARITY: Belongs to the NPIP family.CAUTION: Could be the product of a pseudogene.
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR009443 - NPIP
Pfam Domains: PF06409 - Nuclear pore complex interacting protein (NPIP)
ModBase Predicted Comparative 3D Structure on A6NJU9
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK300277 - Homo sapiens cDNA FLJ56869 complete cds.AK301703 - Homo sapiens cDNA FLJ56875 complete cds.AK296301 - Homo sapiens cDNA FLJ56878 complete cds.AK295170 - Homo sapiens cDNA FLJ54462 complete cds.AK303607 - Homo sapiens cDNA FLJ61625 complete cds.AK128772 - Homo sapiens cDNA FLJ45371 fis, clone BRHIP3017855, highly similar to Homo sapiens nuclear pore complex interacting protein (NPIP).JD041122 - Sequence 22146 from Patent EP1572962.CU690320 - Synthetic construct Homo sapiens gateway clone IMAGE:100018410 5' read LOC23117 mRNA.JD347493 - Sequence 328517 from Patent EP1572962.JD347493 - Sequence 328517 from Patent EP1572962.JD148745 - Sequence 129769 from Patent EP1572962.KF175184 - Homo sapiens clone 20 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175178 - Homo sapiens clone 14 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175193 - Homo sapiens clone 29 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175194 - Homo sapiens clone 30 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175179 - Homo sapiens clone 15 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175180 - Homo sapiens clone 16 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175182 - Homo sapiens clone 18 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175185 - Homo sapiens clone 21 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175186 - Homo sapiens clone 22 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175187 - Homo sapiens clone 23 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175190 - Homo sapiens clone 26 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175201 - Homo sapiens clone 37 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175188 - Homo sapiens clone 24 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175189 - Homo sapiens clone 25 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175191 - Homo sapiens clone 27 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175192 - Homo sapiens clone 28 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175195 - Homo sapiens clone 31 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175196 - Homo sapiens clone 32 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175197 - Homo sapiens clone 33 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175202 - Homo sapiens clone 38 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175218 - Homo sapiens clone p_11 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175216 - Homo sapiens clone p_9 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175198 - Homo sapiens clone 34 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175199 - Homo sapiens clone 35 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175200 - Homo sapiens clone 36 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175203 - Homo sapiens clone 39 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175205 - Homo sapiens clone 41 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175206 - Homo sapiens clone 42 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175215 - Homo sapiens clone p_8 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.JD318007 - Sequence 299031 from Patent EP1572962.KF175181 - Homo sapiens clone 17 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.AK308629 - Homo sapiens cDNA, FLJ98670.KF175183 - Homo sapiens clone 19 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.DQ597666 - Homo sapiens piRNA piR-35732, complete sequence.DQ586845 - Homo sapiens piRNA piR-53957, complete sequence.JD444458 - Sequence 425482 from Patent EP1572962.JD374720 - Sequence 355744 from Patent EP1572962.JD488661 - Sequence 469685 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A6NJU9, AK295170, LOC613037, YP038_HUMANUCSC ID: uc010vem.2RefSeq Accession: NR_002555
Protein: A6NJU9
(aka YP038_HUMAN)
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AK295170.1
exon count:
8 CDS single in 3' UTR:
no
RNA size:
3695
ORF size:
3417 CDS single in intron:
no
Alignment % ID:
99.62
txCdsPredict score:
3592.00 frame shift in genome:
no
% Coverage:
59.03
has start codon:
yes
stop codon in genome:
no
# of Alignments:
2
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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