Human Gene CIAPIN1 (uc002ell.1)
  Description: Homo sapiens cytokine induced apoptosis inhibitor 1 (CIAPIN1), mRNA.
RefSeq Summary (NM_020313): CIAPIN1 is a cytokine-induced inhibitor of apoptosis with no relation to apoptosis regulatory molecules of the BCL2 (MIM 151430) or CASP (see MIM 147678) families. Expression of CIAPIN1 is dependent on growth factor stimulation (Shibayama et al., 2004 [PubMed 14970183]).[supplied by OMIM, Mar 2008].
Transcript (Including UTRs)
   Position: hg19 chr16:57,462,087-57,481,369 Size: 19,283 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr16:57,463,082-57,474,840 Size: 11,759 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:57,462,087-57,481,369)mRNA (may differ from genome)Protein (312 aa)
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-  Comments and Description Text from UniProtKB
  ID: CPIN1_HUMAN
DESCRIPTION: RecName: Full=Anamorsin; AltName: Full=Cytokine-induced apoptosis inhibitor 1; AltName: Full=Fe-S cluster assembly protein DRE2 homolog;
FUNCTION: May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell. Involved in negative control of cell death upon cytokine withdrawal. Promotes development of hematopoietic cells (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Ubiquitously expressed. Highly expressed in heart, liver and pancreas.
MISCELLANEOUS: 'Ana-mors-in' means 'anti-death molecule' in Latin.
SIMILARITY: Belongs to the anamorsin family.
SEQUENCE CAUTION: Sequence=AAC24312.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 63.08 RPKM in Testis
Total median expression: 741.82 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -69.30171-0.405 Picture PostScript Text
3' UTR -334.10995-0.336 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007785 - CIAPIN1

Pfam Domains:
PF05093 - Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
PF08241 - Methyltransferase domain

SCOP Domains:
53335 - S-adenosyl-L-methionine-dependent methyltransferases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2LD4 - NMR MuPIT 2YUI - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q6FI81
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsemblFlyBase  
 Protein SequenceProtein SequenceProtein Sequence  
 AlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051537 2 iron, 2 sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding

Biological Process:
GO:0006915 apoptotic process
GO:0008152 metabolic process
GO:0016226 iron-sulfur cluster assembly
GO:0030097 hemopoiesis
GO:0032259 methylation
GO:0043066 negative regulation of apoptotic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005758 mitochondrial intermembrane space


-  Descriptions from all associated GenBank mRNAs
  AK074263 - Homo sapiens cDNA FLJ23683 fis, clone HEP09633.
AF248964 - Homo sapiens CUA001 mRNA, complete cds.
AF116609 - Homo sapiens PRO0915 mRNA, complete cds.
AL136613 - Homo sapiens mRNA; cDNA DKFZp564E0123 (from clone DKFZp564E0123).
JD245314 - Sequence 226338 from Patent EP1572962.
JD047030 - Sequence 28054 from Patent EP1572962.
JD468700 - Sequence 449724 from Patent EP1572962.
JD188450 - Sequence 169474 from Patent EP1572962.
JD188451 - Sequence 169475 from Patent EP1572962.
BC067303 - Homo sapiens cytokine induced apoptosis inhibitor 1, mRNA (cDNA clone MGC:75531 IMAGE:30389410), complete cds.
BC002568 - Homo sapiens cytokine induced apoptosis inhibitor 1, mRNA (cDNA clone MGC:2478 IMAGE:3139226), complete cds.
BC071740 - Homo sapiens cytokine induced apoptosis inhibitor 1, mRNA (cDNA clone MGC:88090 IMAGE:5563094), complete cds.
BC024196 - Homo sapiens cytokine induced apoptosis inhibitor 1, mRNA (cDNA clone MGC:33509 IMAGE:4816594), complete cds.
JD113795 - Sequence 94819 from Patent EP1572962.
JD362749 - Sequence 343773 from Patent EP1572962.
JD262688 - Sequence 243712 from Patent EP1572962.
JD263841 - Sequence 244865 from Patent EP1572962.
JD284348 - Sequence 265372 from Patent EP1572962.
JD354655 - Sequence 335679 from Patent EP1572962.
JD090743 - Sequence 71767 from Patent EP1572962.
AK292281 - Homo sapiens cDNA FLJ77509 complete cds.
JD485461 - Sequence 466485 from Patent EP1572962.
CR533545 - Homo sapiens full open reading frame cDNA clone RZPDo834G0819D for gene LOC57019, hypothetical protein LOC57019; complete cds, incl. stopcodon.
JD264069 - Sequence 245093 from Patent EP1572962.
JD054189 - Sequence 35213 from Patent EP1572962.
JD228916 - Sequence 209940 from Patent EP1572962.
KJ894379 - Synthetic construct Homo sapiens clone ccsbBroadEn_03773 CIAPIN1 gene, encodes complete protein.
KJ899292 - Synthetic construct Homo sapiens clone ccsbBroadEn_08686 CIAPIN1 gene, encodes complete protein.
KJ899293 - Synthetic construct Homo sapiens clone ccsbBroadEn_08687 CIAPIN1 gene, encodes complete protein.
EU832335 - Synthetic construct Homo sapiens clone HAIB:100067364; DKFZo008F1027 cytokine induced apoptosis inhibitor 1 protein (CIAPIN1) gene, encodes complete protein.
EU832420 - Synthetic construct Homo sapiens clone HAIB:100067449; DKFZo004F1028 cytokine induced apoptosis inhibitor 1 protein (CIAPIN1) gene, encodes complete protein.
AB463558 - Synthetic construct DNA, clone: pF1KB8319, Homo sapiens CIAPIN1 gene for cytokine induced apoptosis inhibitor 1, without stop codon, in Flexi system.
AM393851 - Synthetic construct Homo sapiens clone IMAGE:100002091 for hypothetical protein (CIAPIN1 gene).
CU678046 - Synthetic construct Homo sapiens gateway clone IMAGE:100018842 5' read CIAPIN1 mRNA.
CU692878 - Synthetic construct Homo sapiens gateway clone IMAGE:100017008 5' read CIAPIN1 mRNA.
JD310993 - Sequence 292017 from Patent EP1572962.
JD310992 - Sequence 292016 from Patent EP1572962.
JD439848 - Sequence 420872 from Patent EP1572962.
AK295024 - Homo sapiens cDNA FLJ58887 complete cds, highly similar to Anamorsin (Cytokine-induced apoptosis inhibitor 1) (CUA001).
JD493912 - Sequence 474936 from Patent EP1572962.
JD253138 - Sequence 234162 from Patent EP1572962.
JD026027 - Sequence 7051 from Patent EP1572962.
JD492746 - Sequence 473770 from Patent EP1572962.
JD546761 - Sequence 527785 from Patent EP1572962.
JD299543 - Sequence 280567 from Patent EP1572962.
JD035218 - Sequence 16242 from Patent EP1572962.
BC036316 - Homo sapiens cDNA clone IMAGE:4837159.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6FI81 (Reactome details) participates in the following event(s):

R-HSA-2564824 NADPH reduces NDOR1:CIAPIN1
R-HSA-2564830 Cytosolic iron-sulfur cluster assembly
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K8B6, CPIN1_HUMAN, CUA001, NM_020313, NP_064709, O75206, O75207, PRO0915, Q6FI81, Q9H0W1, Q9P1L7
UCSC ID: uc002ell.1
RefSeq Accession: NM_020313
Protein: Q6FI81 (aka CPIN1_HUMAN)
CCDS: CCDS10781.2

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_020313.2
exon count: 9CDS single in 3' UTR: no RNA size: 2106
ORF size: 939CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1951.00frame shift in genome: no % Coverage: 99.95
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.