Human Gene DYNLRB2 (uc002ffo.3)
  Description: Homo sapiens dynein, light chain, roadblock-type 2 (DYNLRB2), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:80,574,854-80,584,541 Size: 9,688 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr16:80,574,974-80,584,455 Size: 9,482 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:80,574,854-80,584,541)mRNA (may differ from genome)Protein (96 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DLRB2_HUMAN
DESCRIPTION: RecName: Full=Dynein light chain roadblock-type 2; AltName: Full=Dynein light chain 2B, cytoplasmic; AltName: Full=Roadblock domain-containing protein 2;
FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.
SUBUNIT: Homodimer (Probable). The cytoplasmic dynein 1 complex consists of two catalytic heavy chains (HCs) and a number of non- catalytic subunits presented by intermediate chains (ICs), light intermediate chains (LICs) and light chains (LCs); the composition seems to vary in respect to the IC, LIC and LC composition. The heavy chain homodimer serves as a scaffold for the probable homodimeric assembly of the respective non-catalytic subunits. The ICs and LICs bind directly to the HC dimer and the LCs assemble on the IC dimer. Interacts with DYNC1I1 and DYNC1I2. Self-associates. Interacts with DYNLRB1.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton.
TISSUE SPECIFICITY: High expression in heart, brain, placenta, skeletal muscle, prostate and small intestine; moderate in kidney, pancreas, spleen, testis, ovary and colon; low in lung, liver, thymus and leukocyte.
MISCELLANEOUS: Expression is significantly down-regulated in hepatocellular carcinoma (HCC) patients.
SIMILARITY: Belongs to the GAMAD family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): DYNLRB2
CDC HuGE Published Literature: DYNLRB2

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 68.42 RPKM in Testis
Total median expression: 94.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.20120-0.368 Picture PostScript Text
3' UTR -18.8086-0.219 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004942 - Dynein_light-rel
IPR016561 - Dynein_light_roadblock-type

Pfam Domains:
PF03259 - Roadblock/LC7 domain

ModBase Predicted Comparative 3D Structure on Q8TF09
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
  EnsemblFlyBase  
  Protein SequenceProtein Sequence  
  AlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003774 motor activity
GO:0003777 microtubule motor activity
GO:0045505 dynein intermediate chain binding

Biological Process:
GO:0007018 microtubule-based movement
GO:0035735 intraciliary transport involved in cilium assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005868 cytoplasmic dynein complex
GO:0005874 microtubule
GO:0005929 cilium
GO:0030286 dynein complex
GO:0036157 outer dynein arm
GO:0097542 ciliary tip


-  Descriptions from all associated GenBank mRNAs
  KJ904902 - Synthetic construct Homo sapiens clone ccsbBroadEn_14296 DYNLRB2 gene, encodes complete protein.
AF125108 - Homo sapiens bithoraxoid-like protein mRNA, complete cds.
HM005366 - Homo sapiens clone HTL-T-53 testicular tissue protein Li 53 mRNA, complete cds.
BC054892 - Homo sapiens dynein, light chain, roadblock-type 2, mRNA (cDNA clone MGC:62033 IMAGE:6619254), complete cds.
BC035232 - Homo sapiens dynein, light chain, roadblock-type 2, mRNA (cDNA clone IMAGE:5165256), with apparent retained intron.
JD355449 - Sequence 336473 from Patent EP1572962.
HQ257902 - Synthetic construct Homo sapiens clone IMAGE:100072211 Unknown protein gene, encodes complete protein.
JD313119 - Sequence 294143 from Patent EP1572962.
JD426814 - Sequence 407838 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8TF09 (Reactome details) participates in the following event(s):

R-HSA-5624949 Assembly of the anterograde IFT train
R-HSA-5625424 The retrograde IFT train dissociates
R-HSA-5625421 The anterograde IFT train dissociates
R-HSA-5624952 Assembly of the retrograde IFT train
R-HSA-5620924 Intraflagellar transport
R-HSA-5617833 Cilium Assembly
R-HSA-1852241 Organelle biogenesis and maintenance

-  Other Names for This Gene
  Alternate Gene Symbols: DLRB2_HUMAN, DNCL2B, DNLC2B, NM_130897, NP_570967, Q8TF09, ROBLD2
UCSC ID: uc002ffo.3
RefSeq Accession: NM_130897
Protein: Q8TF09 (aka DLRB2_HUMAN)
CCDS: CCDS10929.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_130897.1
exon count: 4CDS single in 3' UTR: no RNA size: 506
ORF size: 291CDS single in intron: no Alignment % ID: 98.99
txCdsPredict score: 782.00frame shift in genome: no % Coverage: 98.22
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.