Human Gene TRMU (uc011ara.2)
  Description: Homo sapiens mRNA sequence.
Transcript (Including UTRs)
   Position: hg19 chr22:46,726,772-46,729,595 Size: 2,824 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersGenetic AssociationsMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA DescriptionsOther NamesGeneReviews
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:46,726,772-46,729,595)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerHGNCMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TRMU
CDC HuGE Published Literature: TRMU

-  MalaCards Disease Associations
  MalaCards Gene Search: TRMU
Diseases sorted by gene-association score: liver failure, transient infantile* (1675), deafness, mitochondrial, modifier of* (477), mitochondrial myopathy, infantile, transient* (247), mitochondrial non-syndromic sensorineural deafness* (11), myopathy, lactic acidosis, and sideroblastic anemia (8)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.34 RPKM in Brain - Cerebellum
Total median expression: 297.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AY927424 - Homo sapiens mRNA sequence.
AY927428 - Homo sapiens mRNA sequence.
BC069212 - Homo sapiens G-2 and S-phase expressed 1, mRNA (cDNA clone IMAGE:4871934).
JD522667 - Sequence 503691 from Patent EP1572962.
JD050305 - Sequence 31329 from Patent EP1572962.
JD077802 - Sequence 58826 from Patent EP1572962.
JD486755 - Sequence 467779 from Patent EP1572962.
JD346823 - Sequence 327847 from Patent EP1572962.
JD493990 - Sequence 475014 from Patent EP1572962.
JD526359 - Sequence 507383 from Patent EP1572962.
JD337857 - Sequence 318881 from Patent EP1572962.
JD318757 - Sequence 299781 from Patent EP1572962.
JD532545 - Sequence 513569 from Patent EP1572962.
BC021234 - Homo sapiens cDNA clone IMAGE:4138335, partial cds.
JD136652 - Sequence 117676 from Patent EP1572962.
JD151275 - Sequence 132299 from Patent EP1572962.
JD202424 - Sequence 183448 from Patent EP1572962.
JD263348 - Sequence 244372 from Patent EP1572962.
JD084812 - Sequence 65836 from Patent EP1572962.
JD132438 - Sequence 113462 from Patent EP1572962.
JD350246 - Sequence 331270 from Patent EP1572962.
JD421739 - Sequence 402763 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC069212
UCSC ID: uc011ara.2
Representative RNA: BC069212

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene TRMU:
trmu-def (TRMU Deficiency)

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC069212.1
exon count: 2CDS single in 3' UTR: no RNA size: 1492
ORF size: 0CDS single in intron: no Alignment % ID: 99.80
txCdsPredict score: 196.50frame shift in genome: no % Coverage: 98.86
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.