Human Gene RRP7B (uc003bcs.3)
  Description: Homo sapiens ribosomal RNA processing 7 homolog B (S. cerevisiae) (RRP7B), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr22:42,951,229-42,978,017 Size: 26,789 Total Exon Count: 8 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:42,951,229-42,978,017)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerH-INVHGNCLynx
PubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.68 RPKM in Ovary
Total median expression: 231.90 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK098201 - Homo sapiens cDNA FLJ40882 fis, clone UTERU2000424.
BC053540 - Homo sapiens ribosomal RNA processing 7 homolog B (S. cerevisiae), mRNA (cDNA clone IMAGE:5588353), containing frame-shift errors.
AK074492 - Homo sapiens cDNA FLJ90011 fis, clone HEMBA1000443, highly similar to Gastric cancer antigen Zg14.
BC014647 - Homo sapiens cDNA clone IMAGE:4646900.
BC007736 - Homo sapiens similar to CGI-96, mRNA (cDNA clone IMAGE:4122376).
AL157851 - Novel human gene mapping to chomosome 22.
JD473212 - Sequence 454236 from Patent EP1572962.
JD543791 - Sequence 524815 from Patent EP1572962.
JD496859 - Sequence 477883 from Patent EP1572962.
BC143340 - Homo sapiens ribosomal RNA processing 7 homolog B (S. cerevisiae), mRNA (cDNA clone IMAGE:9051845).
JD409754 - Sequence 390778 from Patent EP1572962.
JD134256 - Sequence 115280 from Patent EP1572962.
JD439831 - Sequence 420855 from Patent EP1572962.
JD094429 - Sequence 75453 from Patent EP1572962.
DQ574488 - Homo sapiens piRNA piR-42600, complete sequence.
JD181450 - Sequence 162474 from Patent EP1572962.
JD071269 - Sequence 52293 from Patent EP1572962.
JD452724 - Sequence 433748 from Patent EP1572962.
JD364088 - Sequence 345112 from Patent EP1572962.
JD473654 - Sequence 454678 from Patent EP1572962.
JD154616 - Sequence 135640 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC053540
UCSC ID: uc003bcs.3
RefSeq Accession: NR_002184

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: no RNA accession: BC053540.1
exon count: 8CDS single in 3' UTR: no RNA size: 2318
ORF size: 0CDS single in intron: no Alignment % ID: 99.82
txCdsPredict score: 464.00frame shift in genome: no % Coverage: 96.16
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.