Human Gene FGD5-AS1 (uc031ryp.1)
  Description: Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 5, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr3:14,984,286-14,989,400 Size: 5,115 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:14,984,286-14,989,400)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 45.28 RPKM in Nerve - Tibial
Total median expression: 1431.55 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC039246 - Homo sapiens cDNA clone IMAGE:5278517.
BC042881 - Homo sapiens cDNA clone IMAGE:5294815.
JD312478 - Sequence 293502 from Patent EP1572962.
JD415039 - Sequence 396063 from Patent EP1572962.
JD312477 - Sequence 293501 from Patent EP1572962.
JD476824 - Sequence 457848 from Patent EP1572962.
JD094189 - Sequence 75213 from Patent EP1572962.
JD379795 - Sequence 360819 from Patent EP1572962.
JD560740 - Sequence 541764 from Patent EP1572962.
JD094188 - Sequence 75212 from Patent EP1572962.
JD379794 - Sequence 360818 from Patent EP1572962.
JD120616 - Sequence 101640 from Patent EP1572962.
JD120617 - Sequence 101641 from Patent EP1572962.
JD560739 - Sequence 541763 from Patent EP1572962.
U80771 - Human EST clone 25267 mariner transposon Hsmar1 sequence.
BC014104 - Homo sapiens cDNA clone IMAGE:3638258, partial cds.
BC056913 - Homo sapiens cDNA clone IMAGE:4994524, partial cds.
BC008609 - Homo sapiens, Similar to SET domain and mariner transposase fusion gene, clone IMAGE:3462102, mRNA.
AK055924 - Homo sapiens cDNA FLJ31362 fis, clone NB9N41000011.
AK096279 - Homo sapiens cDNA FLJ38960 fis, clone NT2RI2000263.
BC092452 - Homo sapiens cDNA clone IMAGE:30325817.
DQ587899 - Homo sapiens piRNA piR-55011, complete sequence.
BC063441 - Homo sapiens cDNA clone IMAGE:5527329, partial cds.
DQ595063 - Homo sapiens piRNA piR-61175, complete sequence.
DQ595873 - Homo sapiens piRNA piR-61985, complete sequence.
DQ579002 - Homo sapiens piRNA piR-47114, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_046255, uc003bzf.3
UCSC ID: uc031ryp.1
RefSeq Accession: NR_046255

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: no RNA accession: NR_046255.1
exon count: 2CDS single in 3' UTR: no RNA size: 3531
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 408.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.